Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30433
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.59 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.77 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.77 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.5  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 32  VFYWTPAPPHFDNNPRGTIEDAIDGLIQIANNPL 133
           +FY  P PP+   N +G   D +DG++ +A  P+
Sbjct: 225 LFY--PYPPYGTFNIKGDTFDLMDGILGLALGPI 256


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 103 IDSVFYGSPRVVVEVGRGR 47
           ID V YG P    E+GRG+
Sbjct: 586 IDVVRYGKPHCAEEIGRGQ 604


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 103 IDSVFYGSPRVVVEVGRGR 47
           ID V YG P    E+GRG+
Sbjct: 624 IDVVRYGKPHCAEEIGRGQ 642


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 279 DSQRHYPHARVLTESSTI 226
           D  RH PHA V    +T+
Sbjct: 422 DDARHIPHASVTDSENTV 439


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 18  PVCWSCSTGLRPRPTSTTTRGEP*KTLSMA 107
           P    CS   RP   +T+ + EP   ++M+
Sbjct: 876 PTMNKCSDRKRPASQATSVKAEPGSIMAMS 905


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 162 TIVPSVATRINGLLAICIRPSIASSMVPLGLLS 64
           T +PS    +   +A  I+P    + V LG+ S
Sbjct: 220 TYIPSALIVVMSWIAFWIKPEAIPARVTLGVTS 252


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 305 CCQWKLC 285
           CC WK+C
Sbjct: 488 CCWWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 305 CCQWKLC 285
           CC WK+C
Sbjct: 541 CCWWKIC 547


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/57 (19%), Positives = 28/57 (49%)
 Frame = -2

Query: 294  EALPPDSQRHYPHARVLTESSTILVVADISLVTLMPAKLKKAIDTIVPSVATRINGL 124
            ++L   +Q+H+PH ++   +S     A +  + L    +  +  ++V S A+ +  +
Sbjct: 908  QSLLQSNQQHFPHHQIQVSTS-----AGLQTIRLSGHSVLHSAQSVVASSASNVTNV 959


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,989
Number of Sequences: 438
Number of extensions: 4616
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)