Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30433
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr...    28   6.0  
At3g12010.1 68416.m01488 expressed protein contains Prosite PS00...    28   7.9  
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s...    28   7.9  

>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 458

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 107 GHR*RLLWFPSGCCRSGAGPESSRTRPTDR 18
           G    +L F +G  R G G   SRT PT+R
Sbjct: 224 GFENEILEFNNGVTRKGRGSRKSRTSPTER 253


>At3g12010.1 68416.m01488 expressed protein contains Prosite
           PS00626: Regulator of chromosome condensation (RCC1)
           signature 2
          Length = 685

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 402 AVDVVVFGGCTAAGYEIVVQTGADDENSEAHKVLPVEALPPDSQRH 265
           A+DV+V    TA  Y +   T  + +N  A    P     PDS+RH
Sbjct: 417 AIDVLV----TAYSYSVKAGTYKEIKNENATASTPTPGASPDSERH 458


>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
           strong similarity to dynamin-like protein 6 (ADL6)
           [Arabidopsis thaliana] GI:6651399; contains Pfam
           profiles PF01031: Dynamin central region, PF00350:
           Dynamin family, PF02212: Dynamin GTPase effector domain,
           PF00169: PH domain; identical to cDNA dynamin-like
           protein ADL3,  GI:4803835
          Length = 920

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 46  SGPAPLRQQPEGNHRRRYRWPDTNRQQSIDPRGNA 150
           SGP  L++   G H RRY  P  N + S    G++
Sbjct: 865 SGPDSLKRYGSGGHSRRYSDPAQNGEDSSGSGGSS 899


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,430,459
Number of Sequences: 28952
Number of extensions: 319694
Number of successful extensions: 953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)