Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30432X
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    39   1e-04
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    37   6e-04
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    34   0.004
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    30   0.086
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    28   0.26 
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   0.61 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   2.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    23   7.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    23   7.5  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    23   9.9  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 39.1 bits (87), Expect = 1e-04
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = +2

Query: 71  LHVAIQTCDMESVMFLLSV-EVDVNSRVQDATLAPPLHLAASAGNEVLLRSLLL 229
           L ++IQ  +++ V  +LSV +VDVN+   D     PLHLAA AG + ++ +LLL
Sbjct: 59  LFISIQCANVQMVKHILSVFDVDVNA--YDKNKNTPLHLAAMAGRQDIVEALLL 110


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 37.1 bits (82), Expect = 6e-04
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = +2

Query: 50  DKKGRNFLHVAIQTCDMESVMFLLSVEVDVNSRVQDATLAPPLHLAASAGNEVLLRSLLL 229
           DK+G N LH+A+       V++LL +++ V+ R  D     PL  A+  GNE +   LL 
Sbjct: 98  DKQGFNCLHLAVHAASPLLVVYLLHLDISVDLR--DDQQHTPLMWASYHGNEPITNCLLR 155

Query: 230 AGA 238
            GA
Sbjct: 156 WGA 158



 Score = 29.9 bits (64), Expect = 0.086
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = +2

Query: 50  DKKGRNFLHVAIQTCDMESVMFLLSVEVDVNSRVQDATLAPPLHLAASAGNEVLLRSLLL 229
           D+ G   LH A     +    FLL    DVN+   D   A P+H AA  G+   +  L+ 
Sbjct: 31  DEGGATALHWAALNQQIPICKFLLEHGADVNAIGGDLQ-AAPIHWAAKRGSVKTVHYLVQ 89

Query: 230 AGARP 244
            GA P
Sbjct: 90  HGADP 94


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 34.3 bits (75), Expect = 0.004
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +2

Query: 47   VDKKGRNFLHVAIQTCDMESVMFLLSVEVDVNSRVQDATLAPPLHLAASAGNEVLLRSLL 226
            V++ GR+ LH+        +  FL +   DVN R  DA    PLH A+   ++ +  +LL
Sbjct: 858  VNESGRSLLHLTAACGLSNASTFLCNAGCDVNKR--DALGYTPLHYASLYDHKDICVNLL 915

Query: 227  LAGARPN 247
              GA+P+
Sbjct: 916  SNGAKPD 922


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 29.9 bits (64), Expect = 0.086
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = +2

Query: 14  ILEKNPSAAEQVDKKGRNFLHVAI---QTCDMESVMFLLSVEVDVNSRVQDATLAPPLHL 184
           I+EK P    + D+ G + LH+A        ++ ++  L+ EV +N++ +    A  +H 
Sbjct: 21  IIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEV-INAQNESGNTA--MHW 77

Query: 185 AASAGNEVLLRSLLLAGARPN 247
           AA  G+  + + LL AG  P+
Sbjct: 78  AALNGHAEICKLLLEAGGDPH 98


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 71  LHVAIQTCDMESVMFLLSVEVDVNSRVQDATLAPPLHLAASAGN-EVLLRSLLLAGARPN 247
           L +AI+   +E++  LLS +    +  +   + PPL L    G+ ++++  L+LAG  PN
Sbjct: 303 LTLAIKGNHVEALHALLSAQDKETTSTKPGPV-PPLVLTCCVGDYDLIVEELILAGFNPN 361

Query: 248 D 250
           +
Sbjct: 362 E 362



 Score = 25.8 bits (54), Expect = 1.4
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 44  QVDKKGRNFLHVAIQTCDMESVMFLLSVEVDVNSRVQDATLAPPLHLAASAGNEVLLRSL 223
           +VD      LH A++    E V  LL +  + ++R        PL LA++ G   ++  L
Sbjct: 362 EVDASSNTALHTAVRYNRPECVKMLLKLGANPSAR-DFLNSWTPLMLASATGLSEIVSIL 420

Query: 224 LLAGA 238
           + +GA
Sbjct: 421 VASGA 425


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 255 ALSFGRAPANSRLLSRTSFPALAARCSGGASVA 157
           + S+ R+P   +L+  T+ PA++   + GAS+A
Sbjct: 381 SFSYKRSPCKRKLVEATAQPAISTSVAEGASLA 413


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 149 VQDATLAPPLHLAASAGNEVLL 214
           V+D+TL PP   ++   N+VLL
Sbjct: 507 VKDSTLLPPYESSSQGDNQVLL 528


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 137 VNSRVQDATLAPPLHLAASAGNEVLLRSLLLAGARPNDRARINARLCTL 283
           +N+   D   A  LH+   AG+E + RS      R  +   IN  L TL
Sbjct: 310 INNNSDDLLRASKLHMVDLAGSENIGRS-GAENKRARETGMINQSLLTL 357


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 50  DKKGRNFLHVAIQTCDMESVMFL 118
           D    +FLH A+ TC   +  FL
Sbjct: 151 DYSANHFLHNAVSTCKYSAFTFL 173


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 6   LKLYSRRIHLPLSRSTRKVATSCTLPFKRATWK 104
           LK YSRR  LP  +++     S T P   A +K
Sbjct: 138 LKEYSRRFELPSQKTSFDDLFSSTFPNFDAAFK 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 996,198
Number of Sequences: 5004
Number of extensions: 13372
Number of successful extensions: 45
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)