Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30432X
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   3.3  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    20   7.7  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    20   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 139 HVHLHGEQEHHAFHVA 92
           H H+H    HH  H A
Sbjct: 423 HSHIHATPHHHHSHAA 438


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 83   IQTCDMESVMFLLSVEVDVNSRV-QDATLA 169
            ++TC    V+ +L  EVD++  V  DA +A
Sbjct: 1321 LRTCQKAVVLSMLLDEVDISMEVPSDALIA 1350


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 80  QRARSCDLSCRPAQRQMDSS 21
           +R  +C L C+P   Q  SS
Sbjct: 342 RRKNNCPLHCKPELGQSQSS 361


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 70  EVATFLVDLLSGRWILLE 17
           +V  FL+D     W+LLE
Sbjct: 88  KVVQFLIDNKPEIWVLLE 105


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 70  EVATFLVDLLSGRWILLE 17
           +V  FL+D     W+LLE
Sbjct: 88  KVVQFLIDNKPEIWVLLE 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,556
Number of Sequences: 438
Number of extensions: 886
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)