Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30431
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.3  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    27   4.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   7.1  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   9.4  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 355 ILMVLSKTISNLQFLQLSYSKFSPSQISV*YNITTILRQRSP 480
           IL   +K   N Q   L YS++ P Q++V  N +  LRQ  P
Sbjct: 221 ILRNENKKPKNPQLFALKYSEWKPGQLAVLSNNSITLRQLLP 262


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 122  VRTYKRSYHQCVVERVN-IHLTQGNRYKNEFHHHSFKELAI 3
            +R +++ +   + +R   +HL Q + Y +EF H  F E+ I
Sbjct: 3224 LRMWRKKFENILDQRPKFLHLEQCSLYLSEFQHQKFDEVEI 3264


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 364 PLKCL-FFIFIA*MVRWLGGRAHSPLGVKWLLEP 266
           PLK L   I +A    WLGG  +     +W+LEP
Sbjct: 72  PLKNLTHLIIVAGHAVWLGGSTNGEDDSEWILEP 105


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 463  LRQRSPVNLPKLSRFQHQSMLD 528
            L Q + V+LP++  F+H S+LD
Sbjct: 2442 LMQNASVDLPEIKDFEHVSILD 2463


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 478 DCVVLRW*LCYIRQIFEMEKTYYNLTVKTVNSKSFL 371
           D V ++W   YI+Q  E E+   +  VK ++S+ ++
Sbjct: 478 DWVYIQWAQTYIKQSSEPEEVVLDNIVKRLSSRKYI 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,361
Number of Sequences: 5004
Number of extensions: 55824
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)