Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30431
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0225 - 21063445-21063636,21063726-21063911,21064052-210641...    28   7.4  
03_04_0010 + 16364037-16364046,16364769-16364858,16366018-163661...    28   9.8  

>02_04_0225 -
           21063445-21063636,21063726-21063911,21064052-21064138,
           21064589-21064648,21064984-21065052,21065684-21065837,
           21066127-21066203,21066634-21066679,21067167-21067253,
           21067653-21067799,21069042-21069304
          Length = 455

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 212 DLKTYISRWVAHLRLNVYGLQ*PLNTKWAVSSST*PPNHLSN 337
           DL+  IS W+    L  YG Q  LN+ + ++S T PP++  N
Sbjct: 199 DLQPDISHWIVRSYLLHYGYQDTLNS-FDMASETDPPSNHQN 239


>03_04_0010 +
           16364037-16364046,16364769-16364858,16366018-16366151,
           16367092-16367250,16368191-16368292
          Length = 164

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 186 WGSRCNCTEILKLISQGGW 242
           W + C C +I +L++ GGW
Sbjct: 128 WRTMCGCKDIKELLAVGGW 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,104,869
Number of Sequences: 37544
Number of extensions: 359677
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)