Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30431
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               29   5.7  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   10.0 

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 205 QLQRLPHPSNRNALLLHGRNRQ 140
           Q+QR P P+ RN++ LHG   Q
Sbjct: 29  QVQRRPEPTPRNSIFLHGLRAQ 50


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 83  PQHTDGRTSCMSARVGTTALPISAVK 160
           P  TDG T+  S+  GTTA P   VK
Sbjct: 826 PMSTDGTTTAASSTDGTTAAPFIRVK 851



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 77  LVPQHTDGRTSCMSARVGTTALPISA 154
           L+P  TDG T+   +  GTT  PIS+
Sbjct: 518 LIPMSTDGTTAAPMSTDGTTTSPISS 543



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 80   VPQHTDGRTSCMSARVGTTALPIS 151
            VP  TDG T+   +  GTTA PIS
Sbjct: 1486 VPMSTDGTTAAPISTDGTTAAPIS 1509


>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1806

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 478  DCVVLRW*LCYIRQIFEMEKTYYNLTVKTVNSKSF 374
            D + L W   Y   I +   T +NLTVK V SK F
Sbjct: 1159 DAIGLAWVTTYSVSIKQRGNTEHNLTVKNVLSKPF 1193


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 80   VPQHTDGRTSCMSARVGTTALPIS 151
            VP  TDG T+   +  GTTA+P+S
Sbjct: 2121 VPMSTDGTTAAPMSTDGTTAVPMS 2144



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 80   VPQHTDGRTSCMSARVGTTALPIS 151
            VP  TDG T+   +  GTTA+P+S
Sbjct: 2171 VPMSTDGTTAAPMSTDGTTAVPMS 2194



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 80   VPQHTDGRTSCMSARVGTTALPIS 151
            VP  TDG T+   +  GTTA+P+S
Sbjct: 2251 VPMSTDGTTAAPMSTDGTTAVPMS 2274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,107,145
Number of Sequences: 59808
Number of extensions: 414258
Number of successful extensions: 936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)