Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30431
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35110.1 68418.m04154 hypothetical protein predicted protein,...    30   2.0  
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote...    30   2.0  
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    28   6.2  

>At5g35110.1 68418.m04154 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 112

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 202 LQRLPHPSNRNALLLHGRNRQGGGTYPCGHTRGPTI 95
           +QR P+  N    L H R+R GG   PC H R   +
Sbjct: 25  IQRRPYHKNCGCAL-HERSRGGGSATPCRHGRSEVV 59


>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinases
          Length = 1032

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +1

Query: 379 ISNLQFLQLSYSKFSPSQISV*Y-NITTILR---QRSPVN--LPKLSRFQHQSMLD*TLF 540
           + NLQ LQL  + FS S I   Y N + IL+   +   +   LP  S+ +H   LD +  
Sbjct: 302 LPNLQILQLDNNNFSGSDIPASYGNFSNILKLSLRNCSLKGALPDFSKIRHLKYLDLSWN 361

Query: 541 *YLNNIQTKKWAKRNTVNFFISNILN 618
                I +  ++K  T     +NILN
Sbjct: 362 ELTGPIPSSNFSKDVTTINLSNNILN 387


>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = -3

Query: 328 MVRWLGGR----AHSPLGVKWLLEPIDI 257
           +V W+GGR     H P G++WL   IDI
Sbjct: 770 IVPWVGGRILSMTHVPSGIQWLHSRIDI 797


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,148
Number of Sequences: 28952
Number of extensions: 289453
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)