Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30430
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    34   0.004
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   0.28 
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    27   0.65 
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    26   1.1  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   1.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   2.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   3.5  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   4.6  

>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 34.3 bits (75), Expect = 0.004
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 22  GSNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIR 162
           G  I   G D   + D EYPEWLWSL    AP  +      ++  IR
Sbjct: 85  GLCIKAGGVDPVAREDHEYPEWLWSLLDEPAPNSKTARSHARKSAIR 131


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 28.3 bits (60), Expect = 0.28
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 25  SNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWI 159
           S I    + V I+P +   ++  + N G +  +E LDPE+K  WI
Sbjct: 210 SGIINLTDAVSIEPGTGN-KFTINFNNGKSETLEALDPESKNTWI 253


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +2

Query: 77  TQSGCGASTRGLLLASRIWIRRQSSTGSGCAPPACGGTINCAVSGSSKALVV 232
           T S C  S +G L+  R  I+ Q    S    P   GTIN         LVV
Sbjct: 148 TGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVV 199


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 207 ETAQFIVPPHAGGAHPDPVLLCLRIQILDARSSP--RVEAPQPLWV 76
           ETA F+   H   A   P +L   +QIL + S+P   +E   P +V
Sbjct: 44  ETASFLASLHLTKAEEVPDILMQTVQILKSYSTPIANIEMVSPRFV 89


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 195 FIVPPHAGGAHPDPV 151
           F+V P + GAHP PV
Sbjct: 381 FVVGPESAGAHPGPV 395


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 16  VCGSNIYTTGEDVKIKPDSEYPEWLWSL 99
           +CG+  Y   E + +KP ++  +W WSL
Sbjct: 357 LCGTPDYLAPEIISLKPYNKAADW-WSL 383


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 308  FFFFLICHIVLLLIIGYKSL 249
            FF FL   I++L+ +G KSL
Sbjct: 2187 FFLFLSMWIIMLMFLGRKSL 2206


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 61  KPDSEYPEWLWSLNTGAAPRIEDLDPE 141
           +PDS+   W +SL + A  R+E+++ E
Sbjct: 83  QPDSQQILWEYSLISNALERLENIELE 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,883
Number of Sequences: 5004
Number of extensions: 21455
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)