Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30430
(313 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28190| Best HMM Match : RVT_thumb (HMM E-Value=6.2) 29 0.77
SB_24170| Best HMM Match : rve (HMM E-Value=0.61) 29 0.77
SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_50557| Best HMM Match : Kinesin (HMM E-Value=9.6e-24) 27 2.3
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075) 27 4.1
SB_1064| Best HMM Match : Vicilin_N (HMM E-Value=3.3) 27 4.1
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 26 7.2
SB_20261| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23) 25 9.5
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05) 25 9.5
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87) 25 9.5
SB_41246| Best HMM Match : Cadherin (HMM E-Value=0) 25 9.5
SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09) 25 9.5
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_28190| Best HMM Match : RVT_thumb (HMM E-Value=6.2)
Length = 315
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 28 NIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVR 168
N+YT G D+++ D + E +W PR++ + ++Y +RVR
Sbjct: 213 NMYTYGADIEVMSDHKPLESIWR----KPPRLQRMRLRLQKYHVRVR 255
>SB_24170| Best HMM Match : rve (HMM E-Value=0.61)
Length = 768
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 28 NIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVR 168
N+YT G D+++ D + E +W PR++ + ++Y +RVR
Sbjct: 426 NMYTYGADIEVMSDHKPLESIWR----KPPRLQRMRLRLQKYHVRVR 468
>SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 71 ASTQSGCGASTRGLL-LASRIWIR 139
AS +GCGA T GLL LA W+R
Sbjct: 203 ASAATGCGALTAGLLGLAIEPWLR 226
>SB_50557| Best HMM Match : Kinesin (HMM E-Value=9.6e-24)
Length = 547
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = -2
Query: 207 ETAQFIVPPHAGGAHPDPVLLCLRIQILDA----RSSPRVEAPQPLWVLAVRLYLDIF-- 46
E + + P + PD LL L Q++ A +SPR+ P P A+ L L++F
Sbjct: 241 EAGEDLEAPSSSSGKPDQSLLTLD-QVISALASKNTSPRLSVPPPYTDSALTLILNLFFQ 299
Query: 45 TCRV-YVGATYVVDQL 1
C V + GA +++L
Sbjct: 300 QCSVIFSGADVNLERL 315
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 119 ASRIWIRRQSSTGSGCAPPACGGTINCAVSG 211
A+ + + TG GC P C G +CA G
Sbjct: 1310 ATHVCVCENGWTGDGCEIPDCPGNPDCAGRG 1340
>SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)
Length = 310
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 58 IKPDSEYPEWLWSLNTGAAPRIEDLDPETKQ 150
+ PD+ +WL+S N G RI + +KQ
Sbjct: 130 VPPDTPIQKWLYSENPGVVARIASIKYLSKQ 160
>SB_1064| Best HMM Match : Vicilin_N (HMM E-Value=3.3)
Length = 313
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 61 KPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVRAAGMRRNNKLRSLR 210
K D E E +W+ G EDLD T++ W R G + + R+ R
Sbjct: 53 KEDLERTERIWTGQRGFVQEREDLD-RTERIWTGQRGFGQDKEDLDRTKR 101
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 163 PGSSTALSPDPDPRCEEQPPC*GSTA 86
PGS+T SP PD PP STA
Sbjct: 545 PGSTTPPSPPPDSPKSVAPPALRSTA 570
>SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 92 GASTRGLLLASRIWIRRQSSTGSGCAPPACGG 187
G RG ASR RR+++ G GC GG
Sbjct: 314 GKYERGRGSASRYQCRRKNARGEGCEDSVFGG 345
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 166 APGSSTALSPDPDPRCEEQPPC*GSTATLGTRCPALS 56
+P + ++SP PDP + P G T T+ + P S
Sbjct: 1012 SPPKNVSMSPAPDPFTAQVDPYFGKTYTVKGKLPQSS 1048
>SB_20261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 23 APTYTRQVKMSR*SRTASTQSGCG 94
A TYT VK + +TQSGCG
Sbjct: 77 AKTYTGPVKSCQRGGGVTTQSGCG 100
>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
Length = 1084
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 311 FFFFFLICHIVLLLII 264
FFFFF+I I++++II
Sbjct: 879 FFFFFIIIIIIIIIII 894
>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
Length = 1442
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 225 RALELPETAQFIVPPHAGGAHPDPVLLCLRIQILDARSSPRVEAPQPL 82
R EL E + PP G D V L LR+ S+ + P PL
Sbjct: 1175 RVTELKEYKELFQPPAGGTLSSDDVQLLLRVSDNILASAHPDDPPLPL 1222
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 43 GEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQ 150
G + I YP + + NTG+ LD ETKQ
Sbjct: 2394 GSNAAITYSMSYPGFAINSNTGSVTITRPLDRETKQ 2429
>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
Length = 770
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 25 SNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIED 129
S +Y E + KP S+ P LW PR D
Sbjct: 616 SGVYQRLEGDENKPSSDCPPGLWCKRNNEVPRRSD 650
>SB_41246| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 660
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 43 GEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQ 150
G + I YP + + NTG+ LD ETKQ
Sbjct: 427 GSNAAITYSMSYPGFAINSNTGSVTITRPLDRETKQ 462
>SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)
Length = 598
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = -1
Query: 193 YC---SSACRRRAPGSSTALSPDPDPRCEEQPPC*GSTATLGTRCPAL 59
YC SS C PG P P PP G+ GT+CP L
Sbjct: 461 YCYWKSSTCVNTEPGYYCKCKPGYYPA---PPPHNGNLTCFGTKCPPL 505
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 226 KGLRTS*DCAVYCSSAC-RRRAPGSSTALSPDPDPRCEE 113
KG S DC ++C+ AC R G+ + S + + E
Sbjct: 1241 KGALCSEDCEIHCTPACVRAECCGNKSGKSHEDSKKASE 1279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,595
Number of Sequences: 59808
Number of extensions: 178932
Number of successful extensions: 599
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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