Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30430
         (313 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065273-1|AAH65273.1|  138|Homo sapiens mitochondrial ribosomal...    82   4e-16
D87072-1|BAA13241.2| 1512|Homo sapiens KIAA0234 protein.               28   5.0  
U66306-1|AAC31115.1|  251|Homo sapiens protein ( Human retinoid ...    28   6.7  
AJ578231-1|CAE18232.1|  107|Homo sapiens immunoglobulin lambda-1...    28   6.7  
AJ578237-1|CAE18238.1|  107|Homo sapiens immunoglobulin lambda-1...    27   8.8  

>BC065273-1|AAH65273.1|  138|Homo sapiens mitochondrial ribosomal
           protein L54 protein.
          Length = 138

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 32/66 (48%), Positives = 47/66 (71%)
 Frame = +1

Query: 1   KLVNYVCGSNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVRAAGM 180
           +L  Y  G NIY  G+DV +KPD+EYPEWL+ +N G    +E+LDPE+++YW R+R   +
Sbjct: 67  QLTTYAMGVNIYKEGQDVPLKPDAEYPEWLFEMNLGPPKTLEELDPESREYWRRLRKQNI 126

Query: 181 RRNNKL 198
            R+N+L
Sbjct: 127 WRHNRL 132


>D87072-1|BAA13241.2| 1512|Homo sapiens KIAA0234 protein.
          Length = 1512

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 178 CRRRAPGSSTALSPDPDPRCEEQPP 104
           C+ R P    AL PD +P C+E  P
Sbjct: 16  CKTRIPDDCLALRPDMEPGCDEFLP 40


>U66306-1|AAC31115.1|  251|Homo sapiens protein ( Human retinoid X
           receptor alpha mRNA, 3' UTR, partial sequence. ).
          Length = 251

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 186 PPHAGGAHPDPVL-LCLRIQILDARSSPRVEAPQPLWVLAVRLYL 55
           PP   G    P+  LCL + + D+R   +   PQPL  L++ L L
Sbjct: 12  PPGCRGGSLAPLFSLCLGVLVSDSRLPVQTRVPQPLPSLSLLLAL 56


>AJ578231-1|CAE18232.1|  107|Homo sapiens immunoglobulin lambda-1
           variable region protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 22  GSNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVRAAG 177
           G+   T G       ++ YP W +    G APR    D  +K +W   R +G
Sbjct: 15  GTVTLTCGSSTGPVANTHYPCW-FQQKPGQAPRTLIYDTNSKHFWTPARFSG 65


>AJ578237-1|CAE18238.1|  107|Homo sapiens immunoglobulin lambda-1
           variable region protein.
          Length = 107

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/52 (30%), Positives = 19/52 (36%)
 Frame = +1

Query: 22  GSNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVRAAG 177
           G+   T G          YP W +    G APR    D   K  WI  R +G
Sbjct: 15  GTVTLTCGSSTGAVTSGHYPYW-FQQKPGQAPRTLIYDVTNKDSWIPARFSG 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,046,367
Number of Sequences: 237096
Number of extensions: 989595
Number of successful extensions: 4373
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4366
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)