Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30430
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   6.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   8.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   8.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   8.0  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           20   8.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           20   8.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 79  PEWLWSLNTGAAPRIEDLDPETK 147
           PE+ W   TG+ P +    P T+
Sbjct: 267 PEYRWYAQTGSEPMLVLSGPRTR 289


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 79  PEWLWSLNTGAAPRIEDLDPETK 147
           PE+ W   TG+ P +    P T+
Sbjct: 267 PEYRWYAQTGSEPMLVLSGPRTR 289


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 66  RLYLDIFTCRVYVGATYVVDQ 4
           RL+L IFT  V VG   ++ Q
Sbjct: 520 RLFLWIFTLAVLVGTAGIILQ 540


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 66  RLYLDIFTCRVYVGATYVVDQ 4
           RL+L IFT  V VG   ++ Q
Sbjct: 520 RLFLWIFTLAVLVGTAGIILQ 540


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 66  RLYLDIFTCRVYVGATYVVDQ 4
           RL+L IFT  V VG   ++ Q
Sbjct: 515 RLFLWIFTLAVVVGTAGIILQ 535


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 287  HIVLLLIIGYKSLIRTANRQQGP 219
            HI   +   Y +L RTA RQQ P
Sbjct: 1333 HIYSSIDSDYSTLERTAWRQQQP 1355


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +1

Query: 76  YPEWLWSLN 102
           YP+W W+ N
Sbjct: 105 YPDWTWAKN 113


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 52 HLHLSCICW 26
          H+ +SC CW
Sbjct: 6  HVVMSCCCW 14


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = -3

Query: 107 PVLRLHSHSGYSLSGFILTSSPVVYML 27
           P++R+H     ++  +     P+++ML
Sbjct: 350 PMIRVHKTQSQTIDIYSRIGFPILFML 376


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 130 LDPETKQYWIRVRAAGMRRNNKLRS 204
           L+P T++Y+I    A + R++ L S
Sbjct: 114 LNPNTEEYYIIEVNARLSRSSALAS 138


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +1

Query: 76  YPEWLWSLN 102
           YP W W+ N
Sbjct: 108 YPNWSWAKN 116


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 169 RAPGSSTALSPDPDPRCEEQPPC*GSTATLGTRC 68
           + PG    +  +P P   E+ P  G   T G +C
Sbjct: 70  KPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQC 103


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 169 RAPGSSTALSPDPDPRCEEQPPC*GSTATLGTRC 68
           + PG    +  +P P   E+ P  G   T G +C
Sbjct: 71  KPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQC 104


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 149 CFVSGSRSSMRGAAPVLR 96
           CF  G R S     P+L+
Sbjct: 299 CFTGGPRKSHESQCPMLQ 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,138
Number of Sequences: 438
Number of extensions: 1639
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)