Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30430
(313 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01740.1 68416.m00111 expressed protein 42 1e-04
At1g51745.1 68414.m05831 expressed protein 31 0.12
At5g14290.1 68418.m01671 hypothetical protein 30 0.28
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 30 0.38
At1g55325.1 68414.m06320 expressed protein 30 0.38
At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2 ... 28 1.5
At5g39865.1 68418.m04835 glutaredoxin family protein 27 2.6
At5g26960.1 68418.m03217 kelch repeat-containing F-box family pr... 27 3.5
At1g15970.1 68414.m01916 methyladenine glycosylase family protei... 27 3.5
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 26 4.6
At5g24620.1 68418.m02908 thaumatin-like protein, putative simila... 26 6.1
At4g19160.3 68417.m02827 expressed protein 26 6.1
At4g19160.2 68417.m02826 expressed protein 26 6.1
At4g19160.1 68417.m02828 expressed protein 26 6.1
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 26 6.1
At3g54260.1 68416.m05997 expressed protein various predicted pro... 26 6.1
At3g30420.1 68416.m03847 hypothetical protein low similarity to ... 26 6.1
At2g40160.1 68415.m04939 expressed protein 26 6.1
At1g67840.2 68414.m07743 ATP-binding region, ATPase-like domain-... 26 6.1
At1g67840.1 68414.m07744 ATP-binding region, ATPase-like domain-... 26 6.1
At3g32980.1 68416.m04183 peroxidase 32 (PER32) (P32) (PRXR3) ide... 25 8.1
At3g24880.1 68416.m03120 expressed protein 25 8.1
At3g24870.1 68416.m03119 expressed protein 25 8.1
At2g38040.2 68415.m04670 acetyl co-enzyme A carboxylase carboxyl... 25 8.1
At2g38040.1 68415.m04669 acetyl co-enzyme A carboxylase carboxyl... 25 8.1
At1g71680.1 68414.m08271 lysine and histidine specific transport... 25 8.1
At1g60790.1 68414.m06843 expressed protein 25 8.1
>At3g01740.1 68416.m00111 expressed protein
Length = 126
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 16 VCGSNIYTTGEDVKIKPDSEYPEWLWSL 99
V G+N G D KI PDS+YP+WLW L
Sbjct: 54 VVGANTLKDGSDPKILPDSDYPDWLWHL 81
>At1g51745.1 68414.m05831 expressed protein
Length = 635
Score = 31.5 bits (68), Expect = 0.12
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 128 IWIRRQSSTGSGCAPPACGGTINCAVSGSSK 220
++++ ++S GS C P +NC +SG K
Sbjct: 413 VFVKNEASNGSACTSPPASEPVNCILSGIEK 443
>At5g14290.1 68418.m01671 hypothetical protein
Length = 115
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 16 VCGSNIYTTGEDVKIKPDSEYPEWLWSL 99
V +N G D KI P+S++P++LW L
Sbjct: 43 VVSANTLKDGLDPKILPNSDHPDYLWHL 70
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 34 YTTGEDVKIKP--DSEYPEWLWSLNTGAAPRIEDLDPETKQYWIR 162
Y TG+ + D +YP + + TGAAPR++DL + ++R
Sbjct: 307 YGTGKGIHSAASLDLDYPGGMLARGTGAAPRVDDLRKGDRASYLR 351
>At1g55325.1 68414.m06320 expressed protein
Length = 1921
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 83 SGCGASTRGLLLASRIWIRRQSSTGSGCAPPACGGTI 193
S CG G L +W RR+ S G CGGT+
Sbjct: 922 SDCGDGPYGWLALEELW-RRELSCGPSAGHAGCGGTL 957
>At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2
subunit, putative similar to Swiss-Prot:Q9QZH4
5'-AMP-activated protein kinase, beta-2 subunit (AMPK
beta-2 chain) [Rattus norvegicus]
Length = 259
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = -2
Query: 186 PPHAGGAHPDPVLLCLRIQILDARSSPRVEAPQPLWV 76
PPH+ A P++ ++ +L + + P P W+
Sbjct: 20 PPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWM 56
>At5g39865.1 68418.m04835 glutaredoxin family protein
Length = 390
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +1
Query: 73 EYPEWLWSLNTGAAPRIEDLDPETKQYWIRVRAAGMRRN----NKLRSLRKF*GPCCLLA 240
+ P+ + N ++ R++DLDP + + G R LR +RK CC +
Sbjct: 189 DLPKSRFHENVKSSCRVDDLDPPDIVSRFKRKTLGKERVVLYFTSLRGIRKTYEDCCNIR 248
Query: 241 VLIKLL 258
+++K L
Sbjct: 249 IILKSL 254
>At5g26960.1 68418.m03217 kelch repeat-containing F-box family
protein predicted proteins, Arabidopsis thaliana and
Oryza sativa; contains Pfam profiles PF01344: Kelch
motif, PF00646: F-box domain
Length = 413
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 122 SRIWIRRQSSTGSGCAPPAC 181
SR W+R +S G GC AC
Sbjct: 272 SRQWLRSRSVPGGGCVVAAC 291
>At1g15970.1 68414.m01916 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 352
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -1
Query: 202 CAVYCSSACRRRAPGSSTALSPDPDPRCEEQP 107
C+ CSS R+ + + + S D CE P
Sbjct: 70 CSSLCSSILRKNSASMTASYSSDASSSCESSP 101
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 163 VRAAGMRRNNKLRSLRKF*GPCCLL 237
VR +R N K RS++ PCCLL
Sbjct: 32 VREKHVRPNRKTRSVKPEFDPCCLL 56
>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
to thaumatin-like protein [Arabidopsis thaliana]
GI:2435406; contains Pfam profile PF00314: Thaumatin
family
Length = 420
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +2
Query: 119 ASRIWIRRQ---SSTGSG-CAPPACGGTINCAVSGSS 217
+ RIW R + G+G C CGG + CA +G++
Sbjct: 72 SGRIWARTGCNFDANGAGKCMTGDCGGKLECAGNGAA 108
>At4g19160.3 68417.m02827 expressed protein
Length = 454
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 43 GEDVKIKPDSEYPEWLWSLNTG 108
GED I P +EYPE L+ +G
Sbjct: 263 GEDFLIWPKTEYPEELFKATSG 284
>At4g19160.2 68417.m02826 expressed protein
Length = 453
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 43 GEDVKIKPDSEYPEWLWSLNTG 108
GED I P +EYPE L+ +G
Sbjct: 263 GEDFLIWPKTEYPEELFKATSG 284
>At4g19160.1 68417.m02828 expressed protein
Length = 312
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 43 GEDVKIKPDSEYPEWLWSLNTG 108
GED I P +EYPE L+ +G
Sbjct: 122 GEDFLIWPKTEYPEELFKATSG 143
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 61 KPDSEYPEWLWSLNTGAAPRIEDL 132
+PDS + W W N + PR + L
Sbjct: 115 RPDSGFLNWKWKPNDCSLPRFDSL 138
>At3g54260.1 68416.m05997 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 379
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 61 KPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVRAAG--MRRN 189
+PDS Y +W W + PR + L K R+ G M RN
Sbjct: 85 RPDSYYQKWRWIPKACSLPRFDALKFLGKMRGKRIMLVGDSMMRN 129
>At3g30420.1 68416.m03847 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 837
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/30 (26%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 34 YTTGEDVKIKPDS-EYPEWLWSLNTGAAPR 120
Y ++++++P+ ++ EW+ + G APR
Sbjct: 532 YLLSQNMRVQPEEIKFAEWILQIGDGEAPR 561
>At2g40160.1 68415.m04939 expressed protein
Length = 427
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 61 KPDSEYPEWLWSLNTGAAPRIE 126
+PDS+Y +W W + PR +
Sbjct: 113 RPDSKYQKWRWQPQDCSLPRFD 134
>At1g67840.2 68414.m07743 ATP-binding region, ATPase-like
domain-containing protein contains Pfam profile PF02518:
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain protein; similar to ESTs gb|AI995396.1,
dbj|AV557393.1, and dbj|AV557055.1
Length = 445
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 44 VKMSR*SRTASTQSGCGASTRGLLLASRIWIRRQSSTGSGCAPPACGGTINCAVSGSS 217
+K+ S ++S+ S TRGL + +S G G A I A+ G+S
Sbjct: 34 LKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGGETMVASASAIASAIRGAS 91
>At1g67840.1 68414.m07744 ATP-binding region, ATPase-like
domain-containing protein contains Pfam profile PF02518:
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain protein; similar to ESTs gb|AI995396.1,
dbj|AV557393.1, and dbj|AV557055.1
Length = 611
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 44 VKMSR*SRTASTQSGCGASTRGLLLASRIWIRRQSSTGSGCAPPACGGTINCAVSGSS 217
+K+ S ++S+ S TRGL + +S G G A I A+ G+S
Sbjct: 34 LKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGGETMVASASAIASAIRGAS 91
>At3g32980.1 68416.m04183 peroxidase 32 (PER32) (P32) (PRXR3)
identical to SP|Q9LHB9 Peroxidase 32 precursor (EC
1.11.1.7) (Atperox P32) (PRXR3) (ATP16a) {Arabidopsis
thaliana}
Length = 352
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 176 PAARTRIQYCFVSGSRSSMRGAAPVLRLHSH 84
P+ T ++ V+ RS R AA +LRLH H
Sbjct: 41 PSVFTIVRDTIVNELRSDPRIAASILRLHFH 71
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +2
Query: 116 LASRIWIRRQSSTGSGCAPPACG------GTINCAVSGSSKALVV 232
LA+ I IRR S G GC P A +++C V +S +V
Sbjct: 214 LATSISIRRGSVEGKGCIPEAANQKDMHTTSVSCPVFANSNGNIV 258
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +2
Query: 116 LASRIWIRRQSSTGSGCAPPACG------GTINCAVSGSSKALVV 232
LA+ I IRR S G GC P A +++C V +S +V
Sbjct: 209 LATSISIRRGSVEGKGCIPEAANQKDMHTTSVSCPVFANSNGNIV 253
>At2g38040.2 68415.m04670 acetyl co-enzyme A carboxylase
carboxyltransferase alpha subunit family contains Pfam
profile: PF03255: Acetyl co-enzyme A carboxylase
carboxyltransferase alpha subunit
Length = 769
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 231 TTRALELPETAQFIVPPHAGGAHPDPVLLCLRIQI 127
T++ L A I+P GGAH DP +I+I
Sbjct: 343 TSKELVKLNVADGIIPEPLGGAHADPSWTSQQIKI 377
>At2g38040.1 68415.m04669 acetyl co-enzyme A carboxylase
carboxyltransferase alpha subunit family contains Pfam
profile: PF03255: Acetyl co-enzyme A carboxylase
carboxyltransferase alpha subunit
Length = 769
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 231 TTRALELPETAQFIVPPHAGGAHPDPVLLCLRIQI 127
T++ L A I+P GGAH DP +I+I
Sbjct: 343 TSKELVKLNVADGIIPEPLGGAHADPSWTSQQIKI 377
>At1g71680.1 68414.m08271 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GB: AAC49885 GI:2576361 from (Arabidopsis
thaliana); contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 434
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 114 SSPRVEAPQPLWVLAVRLYLDIFTCRVYV 28
S+P V + +P+W V Y+ + C ++V
Sbjct: 258 STPEVPSKKPMWKGVVVAYIIVIICYLFV 286
>At1g60790.1 68414.m06843 expressed protein
Length = 541
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 61 KPDSEYPEWLWSLNTGAAPRIEDLD 135
+PD Y +W W N PR+ D
Sbjct: 227 RPDDAYVKWRWQPNGCDIPRLNGTD 251
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,535,982
Number of Sequences: 28952
Number of extensions: 131354
Number of successful extensions: 514
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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