Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30429
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 27 1.7
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 27 1.7
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 3.0
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 4.0
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 5.2
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 25 6.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.1
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 25 9.1
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -2
Query: 380 LATLFGSEAHNTDCFVFFGMFIHKRTTRVTLTRIFTCFTAGTICP--FHNVILWPLRNGF 207
LA+++G+E +C ++ + + R + + F+ +CP + N I P NG
Sbjct: 5 LASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIHEP--NGK 62
Query: 206 WFLRRRLVVQKAVLREA*SCCF 141
F +R L Q E C F
Sbjct: 63 KFTQRELAEQFDAFYEDMFCEF 84
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 56 DYTVNPPSKFALTVAGWGRYLQFDNGTVRSSKIKL 160
+Y PP +FAL +G+ R L D G V ++K+ L
Sbjct: 136 EYFSQPPFRFALFFSGYFRPLLMD-GAVHATKLDL 169
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 379 WPHFSGPKLTIPTASYFLECSYIRGPPESPLQE 281
W H S KL I + + + S+++GP E QE
Sbjct: 545 WAHSSKTKLNISYSVEWSKSSWLKGPIEKGAQE 577
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.8 bits (54), Expect = 4.0
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -3
Query: 379 WPHFSG--P-KLTIPTASYFLECSYIRGPPESPLQESLPASPP 260
+P FSG P + PTAS C I G P SP + A P
Sbjct: 203 YPGFSGLTPFSIHSPTASSVRSCQSIYGSPLSPPNSAFQAEMP 245
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -3
Query: 325 ECSYIRGPPESPLQESLPASPPAQFVPSTMLFFGHCAMVSGFFADVSLYKRQCYV 161
E + G P +Q+SL + +P+T L+ C V +F + Y +V
Sbjct: 404 EAMMLYGSPSHKIQQSLRIASRILQLPATFLYLPDCMFV--YFKKLEQYSPDVFV 456
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 53 TDYTVNPPSKFALTVAGWGRYLQFDNGTVRSSKIKLHVTLP 175
T V+P K ALTV G G+ +D + K+ T+P
Sbjct: 124 TGIAVHPSEKLALTVGGDGKLRLWDLVRGKGGKVLPLSTIP 164
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 276 YLLHRRHNLSLPQCYSLAIAQWFLVSSQT 190
Y L R+ LPQ S A+ QWF S T
Sbjct: 4689 YYLVVRNIEELPQLLSSALRQWFQQMSNT 4717
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 180 YNETSAKKPETIAQW 224
Y+ +S+KKP+T QW
Sbjct: 674 YDASSSKKPKTFIQW 688
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 41 CLPSTDYTVNPPSKFALTVAGWGRYLQFDNGTVRSSK 151
C+ Y PP KF WG+Y + GT SK
Sbjct: 89 CVAKPSY--KPPRKFCNVCGYWGKYACQNCGTSYCSK 123
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 226 GHCAMVSGFFADVS 185
GH A+++GF+ DVS
Sbjct: 103 GHVALIAGFYEDVS 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,560
Number of Sequences: 5004
Number of extensions: 50041
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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