Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30429
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1460 + 33764106-33764303,33764675-33766201 29 2.3
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 29 3.0
08_02_1518 + 27644404-27645135 28 4.0
02_04_0361 - 22359278-22359439,22362291-22362728 28 4.0
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 28 4.0
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 28 5.3
07_01_0244 + 1786009-1788048 28 5.3
02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876 28 5.3
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 27 7.0
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 27 7.0
06_03_1126 + 27805982-27806475,27806617-27807202 27 9.2
>04_04_1460 + 33764106-33764303,33764675-33766201
Length = 574
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -3
Query: 334 YFLECSYI---RGPPESPLQESLPASPPA 257
YFL CSY +G PE ++S PA+P A
Sbjct: 541 YFLVCSYFYRYKGEPEVAAEDSPPATPEA 569
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -3
Query: 391 GISIWPHF-SGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAQFVPST 239
G +WPH SG + I + C GP + P S P+ P PS+
Sbjct: 691 GTFMWPHMASGTSMAI-SGGGSSSCPVASGPEQLPRSSSCPSIGPGGLPPSS 741
>08_02_1518 + 27644404-27645135
Length = 243
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -2
Query: 131 HCRTASIVPSQPRSERIYLAGSLCNL 54
H R+AS VPS PRS I + G L NL
Sbjct: 4 HLRSAS-VPSSPRSNEIDIEGQLQNL 28
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 186 ETSAKKPETIAQWPKNNIVEGTNCAGGEAGKDSCK 290
E +AKKP +A + V+G GG+AGK K
Sbjct: 57 EEAAKKPAAVAAVVEKREVKGGGGGGGQAGKGKGK 91
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 367 SGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAQFVPSTML 233
S P++ P S + S++ PP +PL ES+P+ P A P +L
Sbjct: 768 SSPEMA-PAGSENCKVSWLPLPPPTPLGESMPSLPVAA-APKVLL 810
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -3
Query: 391 GISIWPHFSGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAQFVP 245
G I+ + P PT Y + + PP P PASPP P
Sbjct: 27 GYDIFATYGSPIPPSPTTCYPVSSAAPTAPPPKPSPTPPPASPPPAPTP 75
>07_01_0244 + 1786009-1788048
Length = 679
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 151 LAASNCPIVELQVSSPASHGQSEFT 77
L+AS PI +VSS + HG ++FT
Sbjct: 380 LSASGMPIAVKRVSSESRHGMTQFT 404
>02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876
Length = 250
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +3
Query: 195 AKKPETIAQWPKNNIV----EGTNCAGGEAGKDSCKGDSGGP 308
AKKP I K I +G+ GG + GDSGGP
Sbjct: 93 AKKPRPIQDLLKEQIAKLREQGSGGGGGNRNRRGGSGDSGGP 134
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 177 LYNETSAKKPETIAQWP--KNNIVEGTNCAGGEAGKDSCKGDSGG 305
L +E SAK+P I+ K ++ G GG G+ +G GG
Sbjct: 309 LRHEPSAKRPLPISSSSDAKRRVLSGHGYTGGADGRGQYRGSDGG 353
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -3
Query: 385 SIWPHFSGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAQFVPSTMLFFGHCAMVS 206
SI + P + ++SY+ ++ PP +PL ++ P PP S F + A V+
Sbjct: 33 SITALLNNPLPSASSSSYY----WLTWPPPTPLPDAPPPPPPHPCDVSRADFAPYLAAVA 88
Query: 205 ---GFFADVSLY 179
G FAD+ L+
Sbjct: 89 DPFGRFADIRLH 100
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 5 SIAPFTDFIRPICLPSTDYTVNPPS 79
+++ F +RPI +PS Y +PPS
Sbjct: 156 TLSSFASKLRPIAIPSRRYDSSPPS 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,773
Number of Sequences: 37544
Number of extensions: 342140
Number of successful extensions: 1381
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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