Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30429
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    59   2e-09
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    54   6e-08
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    53   1e-07
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    32   0.22 
Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical pr...    30   0.88 
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical...    29   2.7  
Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protei...    28   3.6  
AC024839-1|AAF60832.2|  232|Caenorhabditis elegans Thaumatin fam...    28   3.6  
U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 255 CAGGEAGK-DSCKGDSGGPLMYEHSKKYEAVGIVSFGPEKCGQIDIPGVYTNVYEYLPWI 431
           CAG   GK DSC+GDSGGPLM      +E  G+VS+G   C +  +PGVY NV+    WI
Sbjct: 226 CAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVVSWG-IGCARPGMPGVYGNVHSASTWI 284


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +3

Query: 255 CAGG-EAGKDSCKGDSGGPLMYEHSK-KYEAVGIVSFGPEKCGQIDIPGVYTNVYEYLPW 428
           CAG  E G DSC+GDSGGP         +   G++S+G + C Q   PG+YT V  YL W
Sbjct: 197 CAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWG-DGCAQKKQPGIYTMVAPYLSW 255

Query: 429 IQNTI 443
           I   I
Sbjct: 256 ISAII 260



 Score = 33.1 bits (72), Expect = 0.13
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 17  FTDFIRPICLPSTDYTVNPPSKFALTVAGWG 109
           F ++ +PICLPS D+   P  +    V+GWG
Sbjct: 130 FNEYAQPICLPSKDFVYTPGRQ--CVVSGWG 158


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
 Frame = +3

Query: 255 CAGGEAGKDSCKGDSGGPLMYEHSK-KYEAVGIVSFGPEKC-GQID---IPGVYTNVYEY 419
           CAG      +  GDSGGPL+   S  +Y  +GI S+G +   G ID    PGVYT + +Y
Sbjct: 216 CAGAYL-HGTAPGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKY 274

Query: 420 LPWIQNTI 443
           +PWIQ  I
Sbjct: 275 VPWIQGVI 282


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 207 ETIAQWPKN---NIVEGTNCAGGEAGKDSCKGDSGGPLMYEHSKKYE--AVGIVSFGPEK 371
           ET+A   +N   +I   + C   E  K+ C GDSGG L +  S       + IVS+G + 
Sbjct: 241 ETLATCEENWGTSIPFDSFCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYGSD- 299

Query: 372 CGQI 383
           C Q+
Sbjct: 300 CVQL 303


>Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical
           protein F26D2.3a protein.
          Length = 476

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 159 FT*HCLLYNETSAKKPETIAQWPKNNIVEGTNCAGGEAGKDSC 287
           FT  C  +N+TS       ++W   N+   +NCA G    D C
Sbjct: 346 FTNECF-HNDTSVSFISRFSRWVPINLERSSNCASGTVRHDIC 387


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/70 (31%), Positives = 28/70 (40%)
 Frame = -2

Query: 458 LISRFNCILYPWQVFINICVNSRYIDLATLFGSEAHNTDCFVFFGMFIHKRTTRVTLTRI 279
           LI   + I Y W V   IC    +     L GS   N       G+FI   T    L+ I
Sbjct: 117 LIPLASTIGYGWFVAARICQGMAFSATFPLAGSITANWATPYEHGVFIGLLTGNTQLSNI 176

Query: 278 FTCFTAGTIC 249
           FT   +G +C
Sbjct: 177 FTMPVSGWLC 186


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 282 SCKGDSGGPLMYEHSKKYEA--VGIVSFGPEKCGQIDIPGVYTNVYEYLPWIQN 437
           +C GDSGG L Y       A  + I SFG   C   ++   +T V  YL  I N
Sbjct: 234 TCHGDSGGGLEYRDDNYGRAFLIAITSFGTRGCPS-NMLARFTRVDMYLNLICN 286



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  FTDFIRPICLPSTDYTVNPPSKFALTVAGWGR 112
           F++ +RPICLP  +         +L V GWGR
Sbjct: 156 FSENVRPICLPRPNMYYTK----SLAVPGWGR 183


>AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical
           protein F25E5.10 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 285 CKGDSGGPLMYEHSKKYEAVGIVSFGPEKCGQIDIPGVYT 404
           C GD GG  + +      A G+   GP +C + +   VYT
Sbjct: 247 CNGDFGGAAVSKFHGSVRAYGVYVDGPYECNKANRRTVYT 286


>Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical
           protein ZK265.2 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 240 VEGTNCAGGEAGKDSCKGDSGGP 308
           V+GTN   GE G D  +GD G P
Sbjct: 174 VDGTNGKDGEPGPDGPEGDEGTP 196


>U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protein
           75 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = +3

Query: 204 PETIAQWPKNNIVEGTNCAGGEAGKDSCKGDSGGPLMYEHSKKYEAVGIVSFGPEKCGQI 383
           P  I  WP    V G N   G  G D   G+ G P +   +    ++GI        G++
Sbjct: 146 PPGIPGWPGEPGVRGMNGERGSTGLDGAPGEPGSPGLPGFAGLPGSIGITGI-KGVMGEV 204

Query: 384 DIPG 395
             PG
Sbjct: 205 GEPG 208


>AC024839-1|AAF60832.2|  232|Caenorhabditis elegans Thaumatin family
           protein 5 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 222 WPKNNIVEGTNCAGGEAG-KDSCKGDSGGP 308
           WP+ +     NCA G  G ++ C G  G P
Sbjct: 69  WPRTDCDGNMNCATGNCGRREQCNGAGGEP 98


>U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical
           protein R11F4.3 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 376 PHFSGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAQFVPSTML 233
           P  + P+L IP    F E   I   P +P   + P  PP    P  ++
Sbjct: 147 PDLATPELPIPQPPRFAEVPPIPDAPTNPPTTTTPPPPPPTRAPRPII 194


>Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical
           protein F39B2.11 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = -3

Query: 388 ISIWPHFSGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAQFVPSTMLFFGHCAMV 209
           + IWP   G       +  FL CS +   P   +Q + P   P+  +P      G    V
Sbjct: 3   LHIWPSDFGLPTIDVVSLQFLACSKMCASPVRVIQSTRPWRSPSGELPMVAQTEGEAKPV 62

Query: 208 SGFFADVSLYKR 173
           + F   V + K+
Sbjct: 63  TDFEKFVDILKK 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,537
Number of Sequences: 27780
Number of extensions: 293611
Number of successful extensions: 1024
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)