Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30429
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    49   3e-08
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 49.2 bits (112), Expect = 3e-08
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = +3

Query: 234 NIVEGTNCAGGEAGKDSCKGDSGGPLMYEH--SKKYEAVGIVSFGPEKCGQIDIPGVYTN 407
           NI+    CA  + GKD+C+ DSGGP+++++  +K+   +GI+S+G E CG+   P   T 
Sbjct: 329 NIMVNAMCAYAK-GKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAE-CGK--YPNGNTK 384

Query: 408 VYEYLPWI 431
           V  Y+ WI
Sbjct: 385 VGSYIDWI 392


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 431 YPWQVFINICVNSRYI 384
           YPWQ  + IC    Y+
Sbjct: 98  YPWQWGLGICKLRAYV 113


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 310 RGPPESPLQESLPASPP 260
           RG P +P Q   P  PP
Sbjct: 36  RGSPPNPSQGPPPGGPP 52



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 261 RHNLSLPQCY 232
           RHNLSL +C+
Sbjct: 553 RHNLSLHKCF 562


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 111 RPQPATVRANLLGGFTV*SVLG 46
           RP P TV A LL   T    LG
Sbjct: 517 RPNPGTVFARLLSVLTELRTLG 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,869
Number of Sequences: 438
Number of extensions: 3374
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)