Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30429
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    29   1.4  
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family...    29   1.9  
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P...    29   2.5  
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to...    29   2.5  
At5g48380.1 68418.m05978 leucine-rich repeat family protein / pr...    28   3.3  
At3g05330.1 68416.m00581 cyclin family low similarity to microtu...    27   5.8  
At1g78810.2 68414.m09186 expressed protein                             27   5.8  
At1g78810.1 68414.m09185 expressed protein                             27   5.8  
At4g36530.2 68417.m05187 hydrolase, alpha/beta fold family prote...    27   7.7  
At4g36530.1 68417.m05186 hydrolase, alpha/beta fold family prote...    27   7.7  
At1g73730.1 68414.m08537 ethylene-insensitive3-like3 (EIL3) iden...    27   7.7  

>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 1192

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 186 ETSAKKPETIAQWPKNNI--VEGTNCAGGEAGKDSCKGDSGGP 308
           +T   +P     W ++ +  +EG    GGEAGK S  G + GP
Sbjct: 196 DTDPNQPMEEQMWGEDGLQGIEGDGKDGGEAGKGSGPGGATGP 238


>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
           protein
          Length = 513

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = -3

Query: 370 FSGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAQFVPSTMLFFG 224
           F+ P  T PT+S F       GP  +P Q  L  S PA    ST   FG
Sbjct: 433 FATPSSTAPTSSLF-------GPSPTPTQTPLFGSSPASTFGSTQSLFG 474


>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At5g28270, At2g05450,
            At1g45090, At2g16180, At2g06750
          Length = 1224

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 172  AFCTTRRLRRNQKPLRNGQRITLWKGQIVPAVKQVKILVRVT 297
            A C  RR+     PLR+  R ++ + +I+P ++ +  LVR T
Sbjct: 1104 AICLQRRVIEIMDPLRSLTRESVVRSRILPIMEMLPYLVRAT 1145


>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
            At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
            contains Pfam profile PF02902: Ulp1 protease family,
            C-terminal catalytic domain
          Length = 1210

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 172  AFCTTRRLRRNQKPLRNGQRITLWKGQIVPAVKQVKILVRVT 297
            A C  RR+     PLR+  R ++ + +I+P ++ +  LVR T
Sbjct: 1090 AICLQRRVIEIMDPLRSLTRESVVRSRILPIMEMLPYLVRAT 1131


>At5g48380.1 68418.m05978 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 620

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 380 LATLFGSEAHNTDCFVFFGMFIHKRTTRVTLTRIFTCFTAGTICPFHNVILW 225
           L++L  ++  N DC   F   +     R   T +F   TAG IC F  V  W
Sbjct: 21  LSSLVDADQANIDCLRTFKSQVED-PNRYLSTWVFGNETAGYICKFSGVTCW 71


>At3g05330.1 68416.m00581 cyclin family low similarity to
           microtubule-binding protein TANGLED1 [Zea mays]
           GI:11228986; contains Pfam profile PF00134: Cyclin,
           N-terminal domain
          Length = 444

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +1

Query: 148 QDQASRNTAFCTTRRLRRNQKPLRNGQRITLWKGQIVPAVKQVKILVRVTRVVLLCMNIP 327
           ++   R+    T  +LRR+  P RNG  +   K  I P    ++  +  TR    C   P
Sbjct: 342 RNTGKRSPKLSTAAKLRRSFTPTRNGSNLAR-KSSISPKRVTLQAFLSPTRNGNFCKKSP 400

Query: 328 K 330
           K
Sbjct: 401 K 401


>At1g78810.2 68414.m09186 expressed protein
          Length = 480

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +3

Query: 177 LYNETSAKKPETIAQWPKNNIVEGTNCAGGEAGKDSCKGDSGGPLMYEHSKKYEA 341
           LYN     +P++  +WP N++ +  +   G      CK     P+  E  +K  A
Sbjct: 80  LYNNNKRPRPDSGREWPVNDVPQPPSTGSGWPEYRPCK--KTRPISAEEKEKLAA 132


>At1g78810.1 68414.m09185 expressed protein
          Length = 481

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +3

Query: 177 LYNETSAKKPETIAQWPKNNIVEGTNCAGGEAGKDSCKGDSGGPLMYEHSKKYEA 341
           LYN     +P++  +WP N++ +  +   G      CK     P+  E  +K  A
Sbjct: 80  LYNNNKRPRPDSGREWPVNDVPQPPSTGSGWPEYRPCK--KTRPISAEEKEKLAA 132


>At4g36530.2 68417.m05187 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Sphingomonas sp.]
           GI:3426124; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 378

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 105 QPATVRANLLGGFTV*SVLGKHIGLMKSVKGAML 4
           +PA V  N LGGFT  SV    +GL + V G  L
Sbjct: 165 EPAVVVGNSLGGFTALSVA---VGLPEQVTGVAL 195


>At4g36530.1 68417.m05186 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Sphingomonas sp.]
           GI:3426124; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 321

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 105 QPATVRANLLGGFTV*SVLGKHIGLMKSVKGAML 4
           +PA V  N LGGFT  SV    +GL + V G  L
Sbjct: 108 EPAVVVGNSLGGFTALSVA---VGLPEQVTGVAL 138


>At1g73730.1 68414.m08537 ethylene-insensitive3-like3 (EIL3)
           identical to ethylene-insensitive3-like3 (EIL3)
           GB:AF004215 [Arabidopsis thaliana] (Cell 89 (7),
           1133-1144 (1997))
          Length = 567

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 351 VSFGPEKCGQIDIPGVYTNVYEYLPWI-QNTIEP*DER 461
           ++ GPE  G   +   + N Y YLP + + T+ P DER
Sbjct: 422 IALGPEDNGLELVVPEFNNNYTYLPLVNEQTMMPVDER 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,041,937
Number of Sequences: 28952
Number of extensions: 269118
Number of successful extensions: 918
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)