Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30428
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   135   3e-33
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   129   1e-31
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.36 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   0.62 
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    27   0.82 
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   1.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   1.4  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   2.5  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.3  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   7.7  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  135 bits (326), Expect = 3e-33
 Identities = 58/83 (69%), Positives = 71/83 (85%)
 Frame = +1

Query: 10  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 189
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 190 MFQLPKLYAKLHYCVSCAIHSKL 258
            + +PKLY KL YCVSCAIHS++
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRV 83



 Score = 29.1 bits (62), Expect = 0.27
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +3

Query: 252 QVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 350
           +VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 82  RVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  129 bits (312), Expect = 1e-31
 Identities = 55/83 (66%), Positives = 70/83 (84%)
 Frame = +1

Query: 10  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 189
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 190 MFQLPKLYAKLHYCVSCAIHSKL 258
            + +PK+Y KL YCVSCAIH+++
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARV 83



 Score = 29.9 bits (64), Expect = 0.15
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +3

Query: 252 QVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 350
           +VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 82  RVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 91  RCVPKDKAIKKFVIRNIVEAAAVRDI 168
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 150 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 31
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = +1

Query: 130 IRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKLSGTDRRKTEESVLLPRV 309
           + N ++ +   D N+  +Y   +L K+Y  +    SC +H+ + G +  +  +  + P  
Sbjct: 34  LSNSLDLSKTPDYNNVQLYGFIRL-KIYKYVVLVTSCDLHAAILGNNIYRARKFAIFPIT 92

Query: 310 TSL 318
            +L
Sbjct: 93  RTL 95


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 317 REVTLGRSTDSSVFLRSVPDNLLWMAH 237
           R  TL   T   VFLR V + LLW  H
Sbjct: 369 RNNTLPLLTTKRVFLRGVLEELLWFIH 395


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 205  KLYAKLHYCVSCAIHSKLSGTDRRKTEESVL 297
            +L+ +L  CV   +H+K+S TD +   E +L
Sbjct: 3062 ELFYRLSNCVEKVLHNKISITDLKTEYEEIL 3092


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 237 MRHPQQVVRNRSKKDRRIRTPPKSNFPRDMSR 332
           MR+ + + +        IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 256 LSGTDRRKTEESVLLPRVTSLGT 324
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 75  SHSFNVTTSMLGASSITAL---TSHVSN 1
           +  FN+ TS   +SS+T+    +SH+SN
Sbjct: 97  ARDFNILTSNFASSSVTSAPTQSSHISN 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,620
Number of Sequences: 5004
Number of extensions: 25011
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)