Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30427
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 176 3e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 8e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 9e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 93 3e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 8e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 3e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 41 2e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 6e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.040
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.093
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 31 0.16
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.50
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.66
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.0
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.6
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.6
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 4.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 176 bits (428), Expect = 3e-45
Identities = 79/91 (86%), Positives = 83/91 (91%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 415
G + +GDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 416 APLNPKANREKMTQIMFETFNTPAMYVAIQA 508
APLNPK+NREKMTQI+FETFN PA YVAIQA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQA 138
Score = 134 bits (325), Expect = 9e-33
Identities = 62/69 (89%), Positives = 68/69 (98%)
Frame = +1
Query: 505 SLLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 684
++LSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERG
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERG 197
Query: 685 YSFTTTAER 711
Y+F+TTAER
Sbjct: 198 YTFSTTAER 206
Score = 109 bits (261), Expect = 5e-25
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +3
Query: 99 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSY
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSY 53
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (243), Expect = 8e-23
Identities = 41/96 (42%), Positives = 69/96 (71%)
Frame = +2
Query: 221 RDGRYGTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 400
+ G + +++GDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 401 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 508
+LLTE P+NP ANREKM + MFE + +YVAIQA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQA 138
Score = 87.0 bits (206), Expect = 2e-18
Identities = 37/68 (54%), Positives = 52/68 (76%)
Frame = +1
Query: 505 SLLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 684
++LSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +G
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKG 197
Query: 685 YSFTTTAE 708
Y+F TA+
Sbjct: 198 YAFNRTAD 205
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 105 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 209
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.1 bits (226), Expect = 9e-21
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 LGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 430
+G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP
Sbjct: 76 IGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135
Query: 431 KANREKMTQIMFETFNTPAMYVAIQA 508
NRE +IMFE+FN +Y+A+QA
Sbjct: 136 PENRENTAEIMFESFNCAGLYIAVQA 161
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Frame = +1
Query: 538 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 711
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Score = 41.9 bits (94), Expect = 9e-05
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSY 254
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSY 54
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.5 bits (222), Expect = 3e-20
Identities = 40/87 (45%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 LLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 424
+ +G EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 425 NPKANREKMTQIMFETFNTPAMYVAIQ 505
N+EK+ + +ET N PA+ ++Q
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQ 142
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/68 (51%), Positives = 54/68 (79%)
Frame = +1
Query: 508 LLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 687
+L+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGH 203
Query: 688 SFTTTAER 711
++AE+
Sbjct: 204 ELVSSAEK 211
Score = 59.7 bits (138), Expect = 4e-10
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMF 57
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +2
Query: 227 GRYGTEGLLLGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 403
G + L G+E K + +K I +G V NWD +W + +L+ P EHP+
Sbjct: 42 GEFSDGRRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101
Query: 404 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 505
L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 102 LITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 102 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 203
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 520 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 687
+ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.1 bits (144), Expect = 8e-11
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 RDGRYGTEGLLLGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 397
RD + L+G++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 398 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 502
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 212
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 508 LLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 681
L S Y + + ++GIVL+ G+ SH +P+ G + R+ G + YL+K+ +
Sbjct: 154 LFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIK 213
Query: 682 GYSF 693
SF
Sbjct: 214 YPSF 217
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 311 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 490
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 491 YVAIQA 508
Y+ QA
Sbjct: 134 YLTKQA 139
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 102 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 203
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +1
Query: 544 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 690
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 508 LLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 678
L+ LYA G G+V+D G + PI +G + A +L L GR +T +L +L E
Sbjct: 185 LMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRE 241
Score = 34.7 bits (76), Expect = 0.013
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 302 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 469
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 470 TFNTPAMYVAIQ 505
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.1 bits (72), Expect = 0.040
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +1
Query: 505 SLLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 684
SL + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 281 SLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSH 340
Query: 685 YSF 693
+ +
Sbjct: 341 FPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.093
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 362 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 505
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 31.1 bits (67), Expect = 0.16
Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 7/153 (4%)
Frame = +2
Query: 245 GLLLGDEAQSKRGILTLKYPIEHGI----VTNWDDMEKIWHHTFYNE--LRVAPEEHPVL 406
GLLL +E KR L+ + P + +T W++ FY+E L++ E
Sbjct: 413 GLLLREEKIRKR--LSRELPKVQSLLIPEITAWEERNGRTF-LFYDEPLLKICQEATQPK 469
Query: 407 LTEAPLNPKANREKMTQIMFETFNTPAMYVAIQACSRCTRPVVPPVSCWTPATVSP-TPC 583
+ ANR K TP+ R P P V + A SP TP
Sbjct: 470 SLYRSASAAANRPKTATTTDSVNRTPSQR------GRVAVPSTPSVRSASRAMTSPRTPL 523
Query: 584 PSTKDTHSPTPSCVWT*PVATSQTTS*RFSPSA 682
P K+T +P+ S P ATS T+ R P+A
Sbjct: 524 PRVKNTQNPSRSISAEPPSATS--TANRRHPTA 554
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.50
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 527 PVVPPVS-CWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPP 703
P VPP S T + PT ST +P P+ +TS TTS P+ + SL
Sbjct: 136 PTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT------TSTSCTTSTSIPPTGGSSSLST 189
Query: 704 P 706
P
Sbjct: 190 P 190
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 527 PVVPPVSCW-TPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS*RFSPSA-ATRSLP 700
P VPP S T + PT ST SP P+ + +TS T S S T ++P
Sbjct: 193 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVP 252
Query: 701 PPS 709
P S
Sbjct: 253 PTS 255
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 232 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 98
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.66
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +2
Query: 527 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPPP 706
P VP S P+ P P PS++ P PS PV PS A +P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS--GAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Query: 707 S 709
S
Sbjct: 1108 S 1108
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +2
Query: 527 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS*RFSPSAATRSLPPP 706
P VP +S P P P PS P PS P+ TS + S A S PPP
Sbjct: 1012 PPVPKLSSKAP----PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAP--SAPPP 1065
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 334 IPVSDDSVFDGVFEGQDTSFALCLIS**ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 155
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 154 PALHIP 137
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 509 CSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 610
C R TR + PPV+C TP P C K H P
Sbjct: 624 CGR-TR-LYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +3
Query: 471 HST-RPPCTSPS---KPALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSR 638
HST R TSP+ + R RS HR+ G RR P+R HL R RH +
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHS 175
Query: 639 SRPHRLPHEDSH 674
R R H
Sbjct: 176 KRDDRYERRREH 187
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 404 LLTEAPLNPKANREKMTQIMFETFN 478
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 238 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 146
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 518 CTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTT 658
C + PV + T S TP P+T + +PTP+ T T+Q+T
Sbjct: 833 CDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST--TTTAQST 876
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 457 DH-VRNIQHARHVRRHPSLLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 609
DH V+N A ++R++ ++ S +A G+ +G G+ H + + +GYA+P
Sbjct: 126 DHDVQNKSEA-NLRKYKNIES-FAKGQGIDFY-PAGRGIGHQIMVEQGYAMP 174
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 255 NKSPSVPYRPSRPDGGAFPRSRGTR 181
+K+PS PY SRP A S TR
Sbjct: 311 SKAPSYPYSSSRPSASASLASSPTR 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,195
Number of Sequences: 5004
Number of extensions: 73000
Number of successful extensions: 278
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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