Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30426
(746 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella ve... 159 9e-38
UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103; ... 153 4e-36
UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6; Pl... 124 2e-27
UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8; Eu... 115 1e-24
UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit, put... 114 2e-24
UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, wh... 111 1e-23
UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putati... 109 9e-23
UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;... 105 9e-22
UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole... 100 4e-20
UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4... 93 7e-18
UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=1... 92 1e-17
UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15; D... 91 3e-17
UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lambl... 90 6e-17
UniRef50_O57852 Cluster: Replication factor C small subunit (RFC... 89 1e-16
UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa group... 88 2e-16
UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2; Oligoh... 87 3e-16
UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus ... 87 4e-16
UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;... 86 1e-15
UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5; ... 86 1e-15
UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus v... 85 1e-15
UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1; Lodder... 85 1e-15
UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2; Tricho... 85 2e-15
UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kD... 85 2e-15
UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34; E... 85 2e-15
UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2... 84 3e-15
UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC... 84 4e-15
UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep: F... 83 5e-15
UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5... 83 9e-15
UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7; Sa... 82 1e-14
UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1; Ajello... 81 2e-14
UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=1... 81 2e-14
UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamo... 81 4e-14
UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51; E... 81 4e-14
UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;... 80 7e-14
UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1; Tricho... 79 9e-14
UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC... 78 2e-13
UniRef50_Q2UJ68 Cluster: Replication factor C; n=15; Pezizomycot... 78 3e-13
UniRef50_Q9GR09 Cluster: Replication factor C3; n=9; Aconoidasid... 75 1e-12
UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2; Bilate... 75 1e-12
UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161, w... 75 1e-12
UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative... 75 2e-12
UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus N... 75 2e-12
UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1... 75 2e-12
UniRef50_Q5UP47 Cluster: Putative replication factor C small sub... 75 2e-12
UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6; Pl... 74 4e-12
UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC... 73 6e-12
UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putati... 73 1e-11
UniRef50_Q5UQ47 Cluster: Putative replication factor C small sub... 72 1e-11
UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1; ... 72 2e-11
UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces... 72 2e-11
UniRef50_Q5UQ72 Cluster: Putative replication factor C small sub... 71 2e-11
UniRef50_P34429 Cluster: Putative replication factor C subunit 5... 71 3e-11
UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5 (36... 71 4e-11
UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n... 70 5e-11
UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2; Ca... 70 5e-11
UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2 homo... 69 1e-10
UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putati... 68 2e-10
UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1) ... 67 5e-10
UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=... 62 1e-09
UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1; Aspe... 65 2e-09
UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replicatio... 64 3e-09
UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia lam... 63 8e-09
UniRef50_A3CUW4 Cluster: Replication factor C; n=2; Methanomicro... 63 8e-09
UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lambli... 62 1e-08
UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1... 62 2e-08
UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36... 61 2e-08
UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44... 61 3e-08
UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4... 60 4e-08
UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1; Meth... 59 1e-07
UniRef50_O29072 Cluster: Replication factor C large subunit; n=1... 58 3e-07
UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus ... 56 9e-07
UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-l... 56 1e-06
UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida al... 55 2e-06
UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1; uncu... 55 2e-06
UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2... 55 2e-06
UniRef50_A2E9V5 Cluster: Differentiation specific element bindin... 54 3e-06
UniRef50_Q4P896 Cluster: Putative uncharacterized protein; n=1; ... 54 3e-06
UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1... 54 3e-06
UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2... 54 3e-06
UniRef50_A7AMJ0 Cluster: Putative uncharacterized protein; n=1; ... 54 5e-06
UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1; ... 54 5e-06
UniRef50_P42425 Cluster: ATP-dependent protease La homolog; n=46... 54 5e-06
UniRef50_Q6MPI4 Cluster: ATPase, AAA family; n=1; Bdellovibrio b... 52 2e-05
UniRef50_Q17P00 Cluster: Werner helicase interacting protein; n=... 52 2e-05
UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6... 52 2e-05
UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1... 51 3e-05
UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22; A... 51 3e-05
UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Re... 51 3e-05
UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;... 51 3e-05
UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1... 51 3e-05
UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64; E... 51 3e-05
UniRef50_Q2TVY2 Cluster: Checkpoint RAD17-RFC complex; n=2; Aspe... 50 5e-05
UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4; Meth... 50 6e-05
UniRef50_UPI00015BB275 Cluster: replication factor C large subun... 50 8e-05
UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and ... 50 8e-05
UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1... 50 8e-05
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 49 1e-04
UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2... 49 1e-04
UniRef50_P49956 Cluster: Chromosome transmission fidelity protei... 49 1e-04
UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1... 49 1e-04
UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1... 49 1e-04
UniRef50_Q97FT8 Cluster: Lon-like ATP-dependent protease; n=1; C... 48 2e-04
UniRef50_Q1QXX6 Cluster: AAA ATPase, central region; n=1; Chromo... 48 2e-04
UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837, ... 48 2e-04
UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1; Caldiv... 48 2e-04
UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1; ... 48 2e-04
UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and ... 48 3e-04
UniRef50_O48696 Cluster: F3I6.23 protein; n=3; Arabidopsis thali... 48 3e-04
UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1... 48 3e-04
UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1... 47 4e-04
UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit... 47 4e-04
UniRef50_Q0C7D8 Cluster: Predicted protein; n=1; Aspergillus ter... 47 4e-04
UniRef50_UPI0000499B2D Cluster: AAA family ATPase; n=1; Entamoeb... 47 6e-04
UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau subun... 47 6e-04
UniRef50_Q3CFZ5 Cluster: AAA ATPase, central region; n=3; Bacter... 47 6e-04
UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau; n... 47 6e-04
UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1... 47 6e-04
UniRef50_P40151 Cluster: DNA-dependent ATPase MGS1; n=6; Sacchar... 47 6e-04
UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and ... 46 7e-04
UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1; Dict... 46 7e-04
UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putati... 46 7e-04
UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4... 46 7e-04
UniRef50_Q97CY0 Cluster: Lon-like ATP-dependent protease; n=8; C... 46 0.001
UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subuni... 46 0.001
UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subuni... 46 0.001
UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and t... 46 0.001
UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2... 46 0.001
UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and ... 46 0.001
UniRef50_Q6BUL9 Cluster: Similarities with CA0979|IPF19713 Candi... 46 0.001
UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4... 46 0.001
UniRef50_UPI00015B6046 Cluster: PREDICTED: similar to werner hel... 45 0.002
UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3; Cyano... 45 0.002
UniRef50_Q5AF80 Cluster: Putative uncharacterized protein RAD24;... 45 0.002
UniRef50_Q5UQE8 Cluster: Putative replication factor C small sub... 45 0.002
UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5... 45 0.002
UniRef50_UPI0000F31775 Cluster: Cell cycle checkpoint protein RA... 45 0.002
UniRef50_Q8R5R3 Cluster: Uncharacterized ATPase related to the h... 45 0.002
UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n... 45 0.002
UniRef50_A1VDA3 Cluster: AAA ATPase, central domain protein; n=4... 45 0.002
UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2; As... 45 0.002
UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subun... 44 0.003
UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit g... 44 0.003
UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and ... 44 0.003
UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and ... 44 0.003
UniRef50_Q9C587 Cluster: Replication factor C large subunit-like... 44 0.003
UniRef50_Q59Y48 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory ... 44 0.004
UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2; ... 44 0.004
UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau s... 44 0.004
UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau ... 44 0.004
UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2; ... 44 0.004
UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5... 44 0.004
UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and ... 44 0.005
UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and ... 44 0.005
UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subuni... 44 0.005
UniRef50_A0RY55 Cluster: Replication factor C/ATPase involved in... 44 0.005
UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12; S... 44 0.005
UniRef50_Q58812 Cluster: Putative protease La homolog; n=1; Meth... 44 0.005
UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6; Rh... 43 0.007
UniRef50_Q67LR0 Cluster: ATP/GTP-binding domain protein; n=21; B... 43 0.007
UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n... 43 0.007
UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subuni... 43 0.007
UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and ... 43 0.007
UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1; Methy... 43 0.007
UniRef50_A3WR59 Cluster: DNA polymerase III gamma and tau subuni... 43 0.007
UniRef50_P60373 Cluster: Replication factor C large subunit; n=1... 43 0.007
UniRef50_UPI0000DB7733 Cluster: PREDICTED: similar to Werner hel... 43 0.009
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 43 0.009
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 43 0.009
UniRef50_Q0SS35 Cluster: ATPase, AAA family; n=3; Clostridium|Re... 43 0.009
UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and t... 43 0.009
UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with... 43 0.009
UniRef50_Q8SQU0 Cluster: HSP 101 RELATED PROTEIN; n=1; Encephali... 43 0.009
UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1... 43 0.009
UniRef50_O75943 Cluster: Cell cycle checkpoint protein RAD17; n=... 43 0.009
UniRef50_UPI0000E4A039 Cluster: PREDICTED: hypothetical protein;... 42 0.012
UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III, gam... 42 0.012
UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium no... 42 0.012
UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lambl... 42 0.012
UniRef50_Q2U8Q6 Cluster: ATPase related to the helicase subunit ... 42 0.012
UniRef50_A5YSV5 Cluster: Replication factor C small subunit II; ... 42 0.012
UniRef50_Q5UQK9 Cluster: Putative uncharacterized protein; n=1; ... 42 0.016
UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subuni... 42 0.016
UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subuni... 42 0.016
UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and ... 42 0.016
UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and ... 42 0.016
UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22; Epsilonproteo... 42 0.016
UniRef50_A5WC21 Cluster: AAA ATPase, central domain protein; n=3... 42 0.016
UniRef50_A5DW03 Cluster: Putative uncharacterized protein; n=1; ... 42 0.016
UniRef50_Q6XM61 Cluster: FirrV-1-A26; n=1; Feldmannia irregulari... 42 0.021
UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2; ... 42 0.021
UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and ... 42 0.021
UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n... 42 0.021
UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|R... 42 0.021
UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subuni... 41 0.028
UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subuni... 41 0.028
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 41 0.028
UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1; Chlor... 41 0.028
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ... 41 0.028
UniRef50_A3LTW2 Cluster: Replication factor ATPase; n=1; Pichia ... 41 0.028
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 41 0.037
UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau ... 41 0.037
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 41 0.037
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 41 0.037
UniRef50_Q15RT3 Cluster: DNA polymerase III, subunits gamma and ... 41 0.037
UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep: ... 41 0.037
UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;... 41 0.037
UniRef50_A5V6U8 Cluster: AAA ATPase, central domain protein; n=1... 41 0.037
UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and ... 41 0.037
UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n... 41 0.037
UniRef50_Q75DK2 Cluster: ABR019Cp; n=1; Eremothecium gossypii|Re... 41 0.037
UniRef50_Q0UVB4 Cluster: Putative uncharacterized protein; n=1; ... 41 0.037
UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;... 40 0.049
UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subuni... 40 0.049
UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau; ... 40 0.049
UniRef50_Q7M7T5 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 40 0.049
UniRef50_Q67J53 Cluster: Lon-like ATP-dependent protease; n=14; ... 40 0.049
UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2; ... 40 0.049
UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and ... 40 0.049
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 40 0.049
UniRef50_A3YHQ6 Cluster: DNA polymerase III subunits gamma and t... 40 0.049
UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;... 40 0.049
UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and ... 40 0.049
UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and ... 40 0.049
UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;... 40 0.049
UniRef50_Q5KCB2 Cluster: Sister chromatid cohesion-related prote... 40 0.049
UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4; Thermotog... 40 0.049
UniRef50_Q6FYP6 Cluster: Holliday junction ATP-dependent DNA hel... 40 0.049
UniRef50_UPI0000DAE674 Cluster: hypothetical protein Rgryl_01000... 40 0.065
UniRef50_Q74BH4 Cluster: ATPase, AAA family; n=2; Deltaproteobac... 40 0.065
UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits; ... 40 0.065
UniRef50_Q47XQ9 Cluster: DNA polymerase III, gamma/tau subunit; ... 40 0.065
UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau ... 40 0.065
UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit ... 40 0.065
UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and ... 40 0.065
UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subun... 40 0.065
UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and ... 40 0.065
UniRef50_A6G1D5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.065
UniRef50_A4M640 Cluster: AAA ATPase, central domain protein; n=1... 40 0.065
UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n... 40 0.065
UniRef50_Q4MZF5 Cluster: Replication factor C large subunit, put... 40 0.065
UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, wh... 40 0.065
UniRef50_Q6CV97 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 40 0.065
UniRef50_Q8KC00 Cluster: Holliday junction ATP-dependent DNA hel... 40 0.065
UniRef50_A0EHK8 Cluster: Chromosome undetermined scaffold_97, wh... 29 0.067
UniRef50_A7TRM5 Cluster: Putative uncharacterized protein; n=1; ... 33 0.068
UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subuni... 40 0.086
UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subuni... 40 0.086
UniRef50_P73507 Cluster: DNA polymerase III subunit; n=1; Synech... 40 0.086
UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and ... 40 0.086
UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit; ... 40 0.086
UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1; ... 40 0.086
UniRef50_A1GG63 Cluster: DNA polymerase III, subunits gamma and ... 40 0.086
UniRef50_A0RRQ8 Cluster: ATPase, AAA family; n=3; Campylobacter|... 40 0.086
UniRef50_A0Q7R7 Cluster: AAA family-ATPase; n=11; Francisella tu... 40 0.086
UniRef50_Q96S55 Cluster: ATPase WRNIP1; n=31; Eumetazoa|Rep: ATP... 40 0.086
UniRef50_Q4QEE0 Cluster: Putative uncharacterized protein; n=3; ... 29 0.11
UniRef50_UPI00006CCD6F Cluster: ATPase, AAA family protein; n=1;... 39 0.11
UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamo... 39 0.11
UniRef50_Q896F9 Cluster: ATPase associated with chromosome archi... 39 0.11
UniRef50_A6CF37 Cluster: Holliday junction DNA helicase B; n=1; ... 39 0.11
UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and t... 39 0.11
UniRef50_Q9M9R7 Cluster: F14L17.24 protein; n=2; Arabidopsis tha... 39 0.11
UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1; Enterob... 39 0.11
UniRef50_A2G4Z2 Cluster: Differentiation specific element bindin... 39 0.11
UniRef50_Q7S356 Cluster: Putative uncharacterized protein NCU091... 39 0.11
UniRef50_A5DKE6 Cluster: Putative uncharacterized protein; n=1; ... 39 0.11
UniRef50_UPI00015B60A5 Cluster: PREDICTED: hypothetical protein;... 36 0.14
UniRef50_UPI0000D57862 Cluster: PREDICTED: similar to ATPase WRN... 39 0.15
UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4; ... 39 0.15
UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit; ... 39 0.15
UniRef50_Q88WS5 Cluster: Chromosome segregation helicase; n=31; ... 39 0.15
UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and ta... 39 0.15
UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n... 39 0.15
UniRef50_Q28US4 Cluster: AAA ATPase protein; n=11; Proteobacteri... 39 0.15
UniRef50_A6PRD7 Cluster: AAA ATPase, central domain protein; n=4... 39 0.15
UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau... 39 0.15
UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III, gamma... 39 0.15
UniRef50_Q00SY2 Cluster: Sister chromatid cohesion-related; n=2;... 39 0.15
UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6; Pl... 39 0.15
UniRef50_Q5AS54 Cluster: Putative uncharacterized protein; n=1; ... 39 0.15
UniRef50_A5E3H7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.15
UniRef50_A3LXJ6 Cluster: DNA-dependent ATPase MGS1 (Maintenance ... 39 0.15
UniRef50_Q9MBA3 Cluster: Cell cycle checkpoint protein RAD17; n=... 39 0.15
UniRef50_P15026 Cluster: Insertion sequence IS21 putative ATP-bi... 39 0.15
UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC 2.7.... 39 0.15
UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.20
UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1; Pe... 38 0.20
UniRef50_Q3SLE5 Cluster: DNA polymerase subunits gamma and tau; ... 38 0.20
UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits; ... 38 0.20
UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1; Exigu... 38 0.20
UniRef50_Q3F084 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.20
UniRef50_Q1Z5S3 Cluster: DNA polymerase III subunits gamma and t... 38 0.20
UniRef50_Q057E1 Cluster: DNA polymerase III, g and t subunits; n... 38 0.20
UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and ... 38 0.20
UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subuni... 38 0.20
UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains... 38 0.20
UniRef50_A1A0Y3 Cluster: Putative uncharacterized protein; n=2; ... 38 0.20
UniRef50_Q0WNH1 Cluster: STICHEL; n=4; core eudicotyledons|Rep: ... 38 0.20
UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.20
UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1... 38 0.26
UniRef50_Q8CXU0 Cluster: Uncharacterized ATPase related to the h... 38 0.26
UniRef50_Q6NJY2 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.26
UniRef50_Q6KHC7 Cluster: ATPase; n=1; Mycoplasma mobile|Rep: ATP... 38 0.26
UniRef50_Q2J818 Cluster: AAA ATPase, central region; n=5; Actino... 38 0.26
UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and ... 38 0.26
UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and ... 38 0.26
UniRef50_Q043K3 Cluster: Helicase subunit of the Holliday juncti... 38 0.26
UniRef50_A7JFN6 Cluster: DNA polymerase III; n=11; Francisella t... 38 0.26
UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma subun... 38 0.26
UniRef50_A6DEF7 Cluster: ENDOPEPTIDASE CLP ATP-BINDING CHAIN A; ... 38 0.26
UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TA... 38 0.26
UniRef50_A4E9C6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.26
UniRef50_A1WB62 Cluster: AAA ATPase, central domain protein; n=2... 38 0.26
UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and ... 38 0.26
UniRef50_Q9SB72 Cluster: DNA polymerase III like protein; n=2; E... 38 0.26
UniRef50_A1C8D4 Cluster: Cell cycle checkpoint protein rad17; n=... 38 0.26
UniRef50_Q5FLX2 Cluster: Holliday junction ATP-dependent DNA hel... 38 0.26
UniRef50_Q17LI6 Cluster: Replication factor C large subunit, put... 33 0.33
UniRef50_UPI0000E49FBB Cluster: PREDICTED: similar to MGC81266 p... 38 0.35
UniRef50_Q9ZCA1 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 38 0.35
UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4; Bo... 38 0.35
UniRef50_Q6ANB4 Cluster: Related to DNA polymerase III, subunit ... 38 0.35
UniRef50_Q2JGD4 Cluster: DNA polymerase III, subunits gamma and ... 38 0.35
UniRef50_Q7D554 Cluster: DNA polymerase III, delta' subunit; n=2... 38 0.35
UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and ... 38 0.35
UniRef50_A5GNS9 Cluster: ATPase related to the helicase subunit ... 38 0.35
UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and ... 38 0.35
UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and ... 38 0.35
UniRef50_A1HPS4 Cluster: DNA polymerase III, delta prime subunit... 38 0.35
UniRef50_Q7QUE5 Cluster: GLP_59_18656_20185; n=1; Giardia lambli... 38 0.35
UniRef50_P50531 Cluster: Checkpoint protein rad17; n=1; Schizosa... 38 0.35
UniRef50_UPI0000499E26 Cluster: AAA family ATPase; n=1; Entamoeb... 37 0.46
UniRef50_Q9PQU7 Cluster: Conserved hypothetical ATP/GTP-binding ... 37 0.46
UniRef50_Q8EUW0 Cluster: DNA polymerase III gamma-tau subunits; ... 37 0.46
UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and t... 37 0.46
UniRef50_Q1FL61 Cluster: DNA polymerase III, delta prime subunit... 37 0.46
UniRef50_Q0S8Z6 Cluster: DNA polymerase III subunit; n=12; Coryn... 37 0.46
UniRef50_A7H7E2 Cluster: Putative phosphohistidine phosphatase, ... 37 0.46
UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau subun... 37 0.46
UniRef50_A4EPD3 Cluster: ATPase; n=2; Rhodobacteraceae|Rep: ATPa... 37 0.46
UniRef50_Q9AYK3 Cluster: Putative replication factor; n=3; Oryza... 37 0.46
UniRef50_Q2QW40 Cluster: ATPase, AAA family protein, expressed; ... 37 0.46
UniRef50_Q6BP73 Cluster: Debaryomyces hansenii chromosome E of s... 37 0.46
UniRef50_Q50739 Cluster: Uncharacterized AAA domain-containing p... 37 0.46
UniRef50_Q8Y6Z8 Cluster: Holliday junction ATP-dependent DNA hel... 37 0.46
UniRef50_Q22DN2 Cluster: BRCA1 C Terminus (BRCT) domain; n=1; Te... 32 0.56
UniRef50_UPI0000D55FC7 Cluster: PREDICTED: similar to Activator ... 34 0.56
UniRef50_UPI00015B415D Cluster: PREDICTED: similar to werner hel... 37 0.61
UniRef50_UPI00005F1A9A Cluster: transposition helper protein, IS... 37 0.61
UniRef50_Q4SLJ4 Cluster: Chromosome 15 SCAF14556, whole genome s... 37 0.61
UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12; Xanth... 37 0.61
UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: Dna... 37 0.61
UniRef50_Q7NAN5 Cluster: DnaX; n=1; Mycoplasma gallisepticum|Rep... 37 0.61
UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau subun... 37 0.61
UniRef50_Q6AGY6 Cluster: DNA polymerase III, gamma and tau subun... 37 0.61
UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;... 37 0.61
UniRef50_Q0LFS9 Cluster: DNA polymerase III, subunits gamma and ... 37 0.61
UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit... 37 0.61
UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subuni... 37 0.61
UniRef50_A5IXK5 Cluster: ATPase, AAA family; n=1; Mycoplasma aga... 37 0.61
UniRef50_A3IFI7 Cluster: Putative uncharacterized protein; n=1; ... 37 0.61
UniRef50_A1SDH6 Cluster: DNA polymerase III, subunits gamma and ... 37 0.61
UniRef50_A0NHS0 Cluster: ATPase, AAA family; n=3; Bacteria|Rep: ... 37 0.61
UniRef50_A0LGK0 Cluster: AAA ATPase, central domain protein; n=1... 37 0.61
UniRef50_Q75JU2 Cluster: Similar to Thermoanaerobacter tengconge... 37 0.61
UniRef50_Q4FYX5 Cluster: Serine peptidase, putative; n=7; Trypan... 37 0.61
UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putativ... 37 0.61
UniRef50_Q7UPG4 Cluster: Holliday junction ATP-dependent DNA hel... 37 0.61
UniRef50_P31540 Cluster: Heat shock protein HSP98; n=23; Dikarya... 37 0.61
UniRef50_P75177 Cluster: DNA polymerase III subunit gamma/tau; n... 37 0.61
UniRef50_UPI0000D56DA8 Cluster: PREDICTED: similar to CG16838-PD... 29 0.73
UniRef50_UPI00004999D6 Cluster: AAA family ATPase; n=1; Entamoeb... 36 0.80
UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus ... 36 0.80
UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit; ... 36 0.80
UniRef50_Q5FHW6 Cluster: ATP-dependent protease; n=4; Lactobacil... 36 0.80
UniRef50_Q0VNM5 Cluster: DNA polymerase III, gamma and tau subun... 36 0.80
UniRef50_Q0EY57 Cluster: ATPase; n=1; Mariprofundus ferrooxydans... 36 0.80
UniRef50_Q0EXX3 Cluster: DNA polymerase III subunits gamma and t... 36 0.80
UniRef50_A5CF91 Cluster: DNA polymerase III gamma and tau chains... 36 0.80
UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and ... 36 0.80
UniRef50_A0Z287 Cluster: DNA polymerase III subunit delta; n=1; ... 36 0.80
UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and ... 36 0.80
UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and ... 36 0.80
UniRef50_A2DH92 Cluster: Transcription factor, putative; n=1; Tr... 36 0.80
UniRef50_Q4PAP0 Cluster: Putative uncharacterized protein; n=1; ... 36 0.80
UniRef50_A2QMM8 Cluster: Contig An07c0070, complete genome; n=2;... 36 0.80
UniRef50_Q97AM2 Cluster: Guanylate kinase; n=3; Thermoplasmatale... 36 0.80
UniRef50_P61530 Cluster: Holliday junction ATP-dependent DNA hel... 36 0.80
UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau; n... 36 0.80
UniRef50_O64301 Cluster: DNA polymerase accessory protein 44; n=... 36 0.80
UniRef50_Q7VJY3 Cluster: Chaperone protein clpB; n=52; Bacteria|... 36 0.80
UniRef50_UPI0000DB70D6 Cluster: PREDICTED: similar to Activator ... 36 1.1
UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n... 36 1.1
UniRef50_Q7UK75 Cluster: DNA polymerase III, tau/gamma subunit; ... 36 1.1
UniRef50_Q7NAN3 Cluster: RuvB; n=1; Mycoplasma gallisepticum|Rep... 36 1.1
UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau subun... 36 1.1
UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma a... 36 1.1
UniRef50_Q3WEK6 Cluster: DNA-directed DNA polymerase; n=2; Frank... 36 1.1
UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1; Syntr... 36 1.1
UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2; ... 36 1.1
UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_A5Z851 Cluster: Putative uncharacterized protein; n=2; ... 36 1.1
UniRef50_A5UZV8 Cluster: AAA ATPase, central domain protein; n=1... 36 1.1
UniRef50_A2DRZ5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q1DWQ3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_A6R2J2 Cluster: Predicted protein; n=1; Ajellomyces cap... 36 1.1
UniRef50_P35600 Cluster: Replication factor C subunit 1; n=3; Di... 36 1.1
UniRef50_A6EJ04 Cluster: Magnesium chelatase, subunit ChlI; n=2;... 36 1.4
UniRef50_A4B798 Cluster: DNA polymerase III subunit delta; n=1; ... 36 1.4
UniRef50_A3WNZ0 Cluster: DNA polymerase III, gamma/tau subunits;... 36 1.4
UniRef50_Q6YPF5 Cluster: Putative DNA polymerase III like protei... 36 1.4
UniRef50_Q6RHU1 Cluster: Gp44 clamp loader subunit; n=2; T4-like... 36 1.4
UniRef50_Q4UBG2 Cluster: Replication factor c-related protein, p... 36 1.4
UniRef50_Q8DWI4 Cluster: Holliday junction ATP-dependent DNA hel... 36 1.4
UniRef50_P43746 Cluster: DNA polymerase III subunit gamma/tau; n... 36 1.4
UniRef50_Q8RGJ6 Cluster: ATPase associated with chromosome archi... 35 1.8
UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;... 35 1.8
UniRef50_Q8NTR0 Cluster: DNA polymerase III, gamma/tau subunits;... 35 1.8
UniRef50_Q73K31 Cluster: DNA polymerase III, gamma and tau subun... 35 1.8
UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase II... 35 1.8
UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subuni... 35 1.8
UniRef50_Q609A7 Cluster: DNA polymerase III, gamma and tau subun... 35 1.8
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 35 1.8
UniRef50_Q189A7 Cluster: Putative ATP-binding protein; n=2; Clos... 35 1.8
UniRef50_Q0LQN6 Cluster: ATPase AAA-2; n=1; Herpetosiphon aurant... 35 1.8
UniRef50_A6FTR6 Cluster: DNA-directed DNA polymerase gamma/tau s... 35 1.8
UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and t... 35 1.8
UniRef50_A4A386 Cluster: Tail-specific protease; n=3; unclassifi... 35 1.8
UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2; Az... 35 1.8
UniRef50_A1IEP1 Cluster: ATPase, AAA family; n=2; Bacteria|Rep: ... 35 1.8
UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and ... 35 1.8
UniRef50_Q5CYE3 Cluster: RAD24/Rf-C activator 1 AAA+ ATpase; n=2... 35 1.8
UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;... 35 1.8
UniRef50_Q18841 Cluster: Putative uncharacterized protein rfc-1;... 35 1.8
UniRef50_Q96QE3 Cluster: Chromosome fragility-associated gene 1 ... 35 1.8
UniRef50_Q5K9N8 Cluster: Purine nucleotide binding protein, puta... 35 1.8
UniRef50_A1CI50 Cluster: AAA family ATPase, putative; n=15; Pezi... 35 1.8
UniRef50_Q8TXG6 Cluster: Predicted AAA+ class ATPase with chaper... 35 1.8
UniRef50_Q8F7Y2 Cluster: Holliday junction ATP-dependent DNA hel... 35 1.8
UniRef50_Q4L3I4 Cluster: ATP-dependent Clp protease ATP-binding ... 35 1.8
UniRef50_Q7NAZ3 Cluster: Chaperone protein clpB; n=8; Mollicutes... 35 1.8
UniRef50_Q9RMF0 Cluster: DNA polymerase III subunits tau and gam... 35 2.4
UniRef50_Q8YJU8 Cluster: Alr9015 protein; n=2; Nostoc sp. PCC 71... 35 2.4
UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau subun... 35 2.4
UniRef50_Q31JI2 Cluster: ATPase associated with various cellular... 35 2.4
UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and ... 35 2.4
UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8; Chlamyd... 35 2.4
UniRef50_Q26GD5 Cluster: DNA /RNA helicase, superfamily I; n=1; ... 35 2.4
UniRef50_Q0TPP9 Cluster: Mg chelatase-like protein; n=3; Clostri... 35 2.4
UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and ... 35 2.4
UniRef50_Q05HK5 Cluster: Putative AfsR-like regulatory protein; ... 35 2.4
UniRef50_A6LJD0 Cluster: AAA ATPase, central domain protein; n=2... 35 2.4
UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau subun... 35 2.4
UniRef50_A5EY35 Cluster: DNA polymerase III, subunits gamma and ... 35 2.4
UniRef50_A4SMN2 Cluster: DNA polymerase III, subunits gamma and ... 35 2.4
UniRef50_A0LWE4 Cluster: Type II secretion system protein E; n=1... 35 2.4
UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3; ... 35 2.4
UniRef50_A5ADM6 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q8SWI8 Cluster: Similarity to DNA HELICASE RUVB; n=1; E... 35 2.4
UniRef50_A5DZ06 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_A1DAZ0 Cluster: Cell cycle checkpoint protein rad17; n=... 35 2.4
UniRef50_Q8PTL5 Cluster: Transposase; n=11; cellular organisms|R... 35 2.4
UniRef50_Q6L0P4 Cluster: Replication factor C large subunit; n=1... 35 2.4
UniRef50_P35594 Cluster: ATP-dependent Clp protease ATP-binding ... 35 2.4
UniRef50_Q983G8 Cluster: Transcriptional regulator; n=8; Alphapr... 34 3.2
UniRef50_Q83DN8 Cluster: DNA polymerase III, gamma and tau subun... 34 3.2
UniRef50_Q67QC7 Cluster: IstB helper protein N-terminal domain; ... 34 3.2
UniRef50_Q3V8C7 Cluster: Flagellar biosynthetic protein FlhF, pu... 34 3.2
UniRef50_Q1GPR2 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q18U99 Cluster: ATPase involved in DNA replication-like... 34 3.2
UniRef50_A5Z8F9 Cluster: Putative uncharacterized protein; n=2; ... 34 3.2
UniRef50_A3WR60 Cluster: DNA polymerase III subunits gamma and t... 34 3.2
UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and ... 34 3.2
UniRef50_Q4QHQ1 Cluster: Putative uncharacterized protein; n=3; ... 34 3.2
UniRef50_A7SP76 Cluster: Predicted protein; n=1; Nematostella ve... 34 3.2
UniRef50_A0CPS3 Cluster: Chromosome undetermined scaffold_23, wh... 34 3.2
UniRef50_Q2USE9 Cluster: Predicted protein; n=6; Trichocomaceae|... 34 3.2
UniRef50_Q1E568 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_A5DUH6 Cluster: Activator 1 95 kDa subunit; n=1; Lodder... 34 3.2
UniRef50_Q9A1Y1 Cluster: Holliday junction ATP-dependent DNA hel... 34 3.2
UniRef50_Q8T5T1 Cluster: Midasin; n=2; Giardia intestinalis|Rep:... 34 3.2
UniRef50_P42730 Cluster: Heat shock protein 101; n=112; cellular... 34 3.2
UniRef50_P43748 Cluster: DNA polymerase III subunit delta'; n=17... 34 3.2
UniRef50_Q9USQ1 Cluster: Chromosome transmission fidelity protei... 34 3.2
UniRef50_Q9PKA8 Cluster: Probable ATP-dependent Clp protease ATP... 34 3.2
UniRef50_Q7VBL0 Cluster: Chaperone protein clpB; n=9; Bacteria|R... 34 3.2
UniRef50_UPI000049A1E8 Cluster: HSP101-related protein; n=8; Ent... 34 4.3
UniRef50_UPI000038309A Cluster: COG2812: DNA polymerase III, gam... 34 4.3
UniRef50_Q899V4 Cluster: Negative regulator of genetic competenc... 34 4.3
UniRef50_Q895L6 Cluster: Mg(2+) chelatase family protein; n=8; C... 34 4.3
UniRef50_Q73L29 Cluster: ATPase, AAA family; n=2; Treponema|Rep:... 34 4.3
UniRef50_Q661F8 Cluster: DNA polymerase III, subunits gamma and ... 34 4.3
UniRef50_Q5FKX4 Cluster: Chromosomal segregation helicase; n=113... 34 4.3
UniRef50_Q3A5K5 Cluster: ATPase, AAA family; n=5; Desulfuromonad... 34 4.3
UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and ... 34 4.3
UniRef50_Q9AIX4 Cluster: DNA polymerase III-like protein; n=2; W... 34 4.3
UniRef50_Q1Q3W6 Cluster: Putative uncharacterized protein moxR; ... 34 4.3
>UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 401
Score = 159 bits (385), Expect = 9e-38
Identities = 78/95 (82%), Positives = 83/95 (87%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L+ ALLGVS KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP GRHKI+ILD
Sbjct: 99 KTTSILCLARALLGVSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILD 158
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
EADSMTDGAQQALRRTME+YS TTRFALA N S++
Sbjct: 159 EADSMTDGAQQALRRTMEIYSKTTRFALACNTSDK 193
Score = 113 bits (273), Expect = 3e-24
Identities = 47/80 (58%), Positives = 68/80 (85%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIE IQSRCA+LRY+RL+DAQ+L +++EIC+KE + ++G+ A++FTA+GD+R A+NN
Sbjct: 193 KIIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGLEAIIFTAEGDMRQAINN 252
Query: 687 LQSTAQGFGHISPDNVFKVC 746
LQST GFG ++ +NVFKVC
Sbjct: 253 LQSTYYGFGMVNSENVFKVC 272
Score = 98.3 bits (234), Expect = 2e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = +2
Query: 71 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
+ K LPW+EKYRP +IVGNE+TVSRL VFA+ GN PNIIIAGPPG GKTT+ILCL
Sbjct: 47 TKKGFELPWVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCL 106
Query: 251 AQ 256
A+
Sbjct: 107 AR 108
>UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103;
Eukaryota|Rep: Replication factor C subunit 2 - Homo
sapiens (Human)
Length = 354
Score = 153 bits (371), Expect = 4e-36
Identities = 75/95 (78%), Positives = 82/95 (86%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L+ ALLG + KDA+LELNASNDRGIDVVRNKIKMFAQQKVTLP GRHKI+ILD
Sbjct: 82 KTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILD 141
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
EADSMTDGAQQALRRTME+YS TTRFALA N S++
Sbjct: 142 EADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 176
Score = 118 bits (284), Expect = 2e-25
Identities = 51/80 (63%), Positives = 68/80 (85%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRCAVLRY++L+DAQIL +++ + KE + YT++G+ A++FTAQGD+R ALNN
Sbjct: 176 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN 235
Query: 687 LQSTAQGFGHISPDNVFKVC 746
LQST GFG I+ +NVFKVC
Sbjct: 236 LQSTFSGFGFINSENVFKVC 255
Score = 101 bits (243), Expect = 1e-20
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = +2
Query: 65 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 244
P S+ LPW+EKYRP ++IVGNEDTVSRL VFA+ GN PNIIIAGPPG GKTT+IL
Sbjct: 28 PGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 87
Query: 245 CLAQ 256
CLA+
Sbjct: 88 CLAR 91
>UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6;
Plasmodium|Rep: Replication factor C subunit 4 -
Plasmodium falciparum
Length = 336
Score = 124 bits (299), Expect = 2e-27
Identities = 59/95 (62%), Positives = 75/95 (78%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L++ +LG K AVLELNAS+DRGI+V+R++IK FA++ ++LPPG+HKI+ILD
Sbjct: 62 KTTSILCLASEMLGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILD 121
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
E DSMT AQQ+LRR MELYS TTRFALA N SE+
Sbjct: 122 EVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEK 156
Score = 93.1 bits (221), Expect = 7e-18
Identities = 39/80 (48%), Positives = 60/80 (75%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II+ +QSRCA++RY +LSD Q+L ++++IC+ EN+ YT++G+ A+ F A GDLR A+N
Sbjct: 156 KIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNC 215
Query: 687 LQSTAQGFGHISPDNVFKVC 746
LQST G I+ +NV +C
Sbjct: 216 LQSTYAGLEVINKENVLHIC 235
Score = 72.1 bits (169), Expect = 1e-11
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
WIEKYRP+ D++VGN ++ L +GN PN+++AG PG GKTT+ILCLA
Sbjct: 18 WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLA 70
>UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8;
Eutheria|Rep: Replication factor C subunit 2 - Rattus
norvegicus (Rat)
Length = 216
Score = 115 bits (276), Expect = 1e-24
Identities = 48/80 (60%), Positives = 68/80 (85%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRC LRY++L+DAQ+L++++ + KE + YT++G+ A++FTAQGD+R ALNN
Sbjct: 38 KIIEPIQSRCGWLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNN 97
Query: 687 LQSTAQGFGHISPDNVFKVC 746
LQST GFG+I+ +NVFKVC
Sbjct: 98 LQSTFSGFGYINSENVFKVC 117
Score = 68.5 bits (160), Expect = 2e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 397 ILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
ILDEADSMTDGAQQALRRTME+YS TTRFALA N S++
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 38
>UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit,
putative; n=5; Eukaryota|Rep: Replication factor C,
37kD-subunit, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 147
Score = 114 bits (274), Expect = 2e-24
Identities = 51/64 (79%), Positives = 58/64 (90%)
Frame = +2
Query: 68 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 247
++SK +LPWIEKYRPQ F++IVGNEDTVSRL VFA GNAPNIIIAGPPGVGKTTTILC
Sbjct: 20 AASKKKSLPWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILC 79
Query: 248 LAQL 259
LA++
Sbjct: 80 LARI 83
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/39 (79%), Positives = 36/39 (92%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQK 363
L+ LLG +F++AVLELNASN+RGIDVVRNKIKMFAQQK
Sbjct: 80 LARILLGENFREAVLELNASNERGIDVVRNKIKMFAQQK 118
>UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, whole
genome shotgun sequence; n=2; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_95, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 384
Score = 111 bits (268), Expect = 1e-23
Identities = 55/95 (57%), Positives = 72/95 (75%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L+ +LG S K++VLELNAS+DRGI+ VR +IK FAQ+KV L G+HKIVILD
Sbjct: 51 KTSSVLCLARQILGDSIKESVLELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVILD 110
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
EADS+T+GAQQALR + YS++TRF L+ N+S +
Sbjct: 111 EADSLTEGAQQALRMIISDYSTSTRFVLSCNDSTK 145
Score = 97.5 bits (232), Expect = 3e-19
Identities = 39/80 (48%), Positives = 66/80 (82%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
++I+ IQSRC +LR++RL + +I +++EI ++E+++YT++G+ A+ FTA+GD+R A+NN
Sbjct: 145 KLIDAIQSRCCILRFNRLGEKEIRDRLLEIISQESVTYTKDGLDALTFTAEGDMRQAINN 204
Query: 687 LQSTAQGFGHISPDNVFKVC 746
LQ+T GFG ++ +NVFKVC
Sbjct: 205 LQATFTGFGLVNRENVFKVC 224
Score = 85.8 bits (203), Expect = 1e-15
Identities = 34/57 (59%), Positives = 45/57 (78%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
NL W+EKYRP+T D++ GN D V +L AK GN PNII+ GPPG+GKT+++LCLA+
Sbjct: 4 NLIWLEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPNIILVGPPGIGKTSSVLCLAR 60
>UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
4, putative - Leishmania infantum
Length = 360
Score = 109 bits (261), Expect = 9e-23
Identities = 63/94 (67%), Positives = 68/94 (72%), Gaps = 16/94 (17%)
Frame = +1
Query: 277 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP-----PGR-----------HKIVILDE 408
KDAVLELNAS+DRG+DVVR KIK+FAQ K TLP G HKIV+LDE
Sbjct: 86 KDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKFFSTGEGVAKDDHVVHLHKIVLLDE 145
Query: 409 ADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
ADSMT AQQALRRTMEL+SSTTRFA A NNS R
Sbjct: 146 ADSMTPAAQQALRRTMELHSSTTRFAFACNNSSR 179
Score = 105 bits (252), Expect = 1e-21
Identities = 48/98 (48%), Positives = 72/98 (73%)
Frame = +3
Query: 453 HGAVFQYNSFCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEG 632
H + ++ C +S IIEPIQSRCAV+R+ +LSDA IL +++ + +EN+SYT++G
Sbjct: 164 HSSTTRFAFACNNSS---RIIEPIQSRCAVVRFKKLSDADILKRLVYVIQQENVSYTDDG 220
Query: 633 VSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVC 746
+ A+++ A+GDLR ALN LQ+T G+G ++ DNVFKVC
Sbjct: 221 LEALLYLAEGDLRQALNALQATHTGYGLVNADNVFKVC 258
Score = 91.9 bits (218), Expect = 2e-17
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+ N PW+EKYRPQT DIVGN + +SRL V AK GN PN+++ GPPG GKTT++LCLA+
Sbjct: 3 TVNTPWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLAR 61
>UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 40 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 315
Score = 105 bits (253), Expect = 9e-22
Identities = 53/88 (60%), Positives = 66/88 (75%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 426
L+ LL +KDAVLELNAS++RGI+ +R+ IK F ++K+ LP KIVILDEADSMT
Sbjct: 60 LAHELLKDRYKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTT 119
Query: 427 GAQQALRRTMELYSSTTRFALAANNSER 510
A QALRRTME++S TTRF LA N E+
Sbjct: 120 AAFQALRRTMEIHSKTTRFVLACNTPEK 147
Score = 70.5 bits (165), Expect = 4e-11
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +2
Query: 74 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
SK +PW+EKYRP+ D+I+GN D + L F + P++++ G PG+GKTT+I CLA
Sbjct: 2 SKIQAIPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLA 61
Score = 60.1 bits (139), Expect = 6e-08
Identities = 28/78 (35%), Positives = 50/78 (64%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRCA L + L + +++ ++ EI + E + ++ V A+ ++GD+R A+N
Sbjct: 147 KIIEPIQSRCARLTFRPLGEEELMNRIKEIAHCEGVDIEDDAVKALEIVSEGDMRKAINA 206
Query: 687 LQSTAQGFGHISPDNVFK 740
LQ+ A G I+ + V++
Sbjct: 207 LQTCAIIQGKITKEQVYQ 224
>UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4252,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 331
Score = 100 bits (239), Expect = 4e-20
Identities = 52/66 (78%), Positives = 54/66 (81%), Gaps = 2/66 (3%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDR--GIDVVRNKIKMFAQQKVTLPPGRHKIVI 399
K L+ ALLG S KDAVLELNASNDR GIDVVRNKIKMFAQQKVTLP GRHKI+I
Sbjct: 64 KTTSILCLARALLGASMKDAVLELNASNDRHRGIDVVRNKIKMFAQQKVTLPKGRHKIII 123
Query: 400 LDEADS 417
LDEADS
Sbjct: 124 LDEADS 129
Score = 99 bits (238), Expect = 6e-20
Identities = 44/63 (69%), Positives = 52/63 (82%)
Frame = +2
Query: 68 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 247
S++ + LPW+EKYRP D IVGNE+TVSRL VFA+ GN PNIIIAGPPG GKTT+ILC
Sbjct: 11 STAGTYELPWVEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILC 70
Query: 248 LAQ 256
LA+
Sbjct: 71 LAR 73
>UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4;
Thermoplasmatales|Rep: Replication factor C small
subunit - Thermoplasma volcanium
Length = 318
Score = 93.1 bits (221), Expect = 7e-18
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 426
L+ L G S+K+ +E+NASN+ GIDV+RNKIK A+ + + P G KI+ LDEAD +T
Sbjct: 56 LAIELFGESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTA 114
Query: 427 GAQQALRRTMELYSSTTRFALAANNSER 510
AQ ALRRTME+YS TTRF A N S +
Sbjct: 115 EAQAALRRTMEMYSETTRFVFACNYSSK 142
Score = 56.4 bits (130), Expect = 7e-07
Identities = 29/79 (36%), Positives = 46/79 (58%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II PIQSR V+R+ + D I K+ EI E + +E + A+V + GD+R A+N
Sbjct: 142 KIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINV 201
Query: 687 LQSTAQGFGHISPDNVFKV 743
LQ+ G ISP ++++
Sbjct: 202 LQAVYTS-GEISPKKIYEI 219
Score = 52.8 bits (121), Expect = 9e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
W EKYRP++ +I G ++ + +L F + P+++ AG G GKT+T + LA
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALA 57
>UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=18;
Thermoprotei|Rep: Replication factor C small subunit -
Sulfolobus solfataricus
Length = 330
Score = 92.3 bits (219), Expect = 1e-17
Identities = 49/82 (59%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +1
Query: 259 LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGA 432
L G ++ + LELNAS++RGIDV+RNK+K FA+ T+ PG K+V+LDEAD+MT A
Sbjct: 65 LYGDNYTEYFLELNASDERGIDVIRNKVKEFAR---TVIPGDIPFKVVLLDEADNMTADA 121
Query: 433 QQALRRTMELYSSTTRFALAAN 498
QQALRRTMELY+ TRF LA N
Sbjct: 122 QQALRRTMELYTENTRFILACN 143
Score = 70.1 bits (164), Expect = 5e-11
Identities = 30/60 (50%), Positives = 38/60 (63%)
Frame = +2
Query: 71 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
S+K + W EKYRP+T DDIV + + RL F K N P+++ AGPPG GKTT L L
Sbjct: 2 STKVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALAL 61
Score = 57.6 bits (133), Expect = 3e-07
Identities = 29/79 (36%), Positives = 46/79 (58%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSR A+ R+ L ++ ++I I E Y ++ + + GD+R ++N
Sbjct: 147 KIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKSINI 206
Query: 687 LQSTAQGFGHISPDNVFKV 743
LQ+ A +G IS + VFKV
Sbjct: 207 LQA-ASAYGKISVEAVFKV 224
>UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15;
Dikarya|Rep: Replication factor C subunit 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 340
Score = 91.1 bits (216), Expect = 3e-17
Identities = 46/95 (48%), Positives = 63/95 (66%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L+ + G ++ + VLELNAS+DRGIDVVRN+IK FA + G K++ILD
Sbjct: 59 KTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILD 117
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
EAD+MT+ AQ ALRR +E Y+ TRF + AN + +
Sbjct: 118 EADAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 152
Score = 71.3 bits (167), Expect = 2e-11
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
NLPW+EKYRP+T D++ G + ++ + F G P+++ GPPG GKT+TI+ LA+
Sbjct: 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68
Score = 35.9 bits (79), Expect = 1.1
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ + ++ + SRC R+ L I ++ + E L + A++ +
Sbjct: 143 FCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSN 202
Query: 660 GDLRSALNNLQSTAQGFGH-----ISPDNVFKVC 746
GD+R LN LQS + IS D +++ C
Sbjct: 203 GDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 236
>UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_177_25642_24674 - Giardia lamblia
ATCC 50803
Length = 322
Score = 89.8 bits (213), Expect = 6e-17
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 426
L+ +LG A LELNAS++R + +R K+K FAQ++VTLP G K+V LDE D+MT+
Sbjct: 57 LANQMLGAHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTE 116
Query: 427 GAQQALRRTMELYSSTTRFALAANN 501
AQQ LRR M+ + +TRF LA NN
Sbjct: 117 AAQQVLRRIMDDETGSTRFCLACNN 141
Score = 76.2 bits (179), Expect = 8e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
LP+IE+YRP+T D ++GN + ++RL FA GN PNI+ AG PG+GKTT LCLA
Sbjct: 4 LPFIERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLA 58
Score = 57.6 bits (133), Expect = 3e-07
Identities = 27/74 (36%), Positives = 44/74 (59%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC++ ++IEP+QSRC VLR + A+++ + EIC KE + E + ++ +
Sbjct: 135 FCLACNNISKVIEPVQSRCCVLRIMPATQAELIKYLQEICEKEGVKSDTEALKELISISG 194
Query: 660 GDLRSALNNLQSTA 701
D+RS LN+LQ A
Sbjct: 195 NDVRSCLNSLQLVA 208
>UniRef50_O57852 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Pho RFC intein]; n=8; Euryarchaeota|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Pho RFC intein] - Pyrococcus
horikoshii
Length = 855
Score = 89.0 bits (211), Expect = 1e-16
Identities = 45/88 (51%), Positives = 62/88 (70%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 426
LS L G +++ LELNAS++RGI+V+R K+K FA+ K + KI+ LDEAD++T
Sbjct: 593 LSRELFGENWRHNFLELNASDERGINVIREKVKEFARTK-PIGGASFKIIFLDEADALTQ 651
Query: 427 GAQQALRRTMELYSSTTRFALAANNSER 510
AQQALRRTME++SS RF L+ N S +
Sbjct: 652 DAQQALRRTMEMFSSNVRFILSCNYSSK 679
Score = 73.7 bits (173), Expect = 4e-12
Identities = 36/79 (45%), Positives = 51/79 (64%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRCA+ R+ L D I ++ I E L TEEG+ A+++ A+GD+R A+N
Sbjct: 679 KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINI 738
Query: 687 LQSTAQGFGHISPDNVFKV 743
LQ+ A I+ +NVF V
Sbjct: 739 LQAAAALDKKITDENVFMV 757
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 238
PW+EKYRPQ D+IVG E V RL + KTG+ P+++ AGPPGVGK T
Sbjct: 16 PWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa
group|Rep: Rfc4 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 202
Score = 87.8 bits (208), Expect = 2e-16
Identities = 56/99 (56%), Positives = 65/99 (65%), Gaps = 9/99 (9%)
Frame = +1
Query: 241 TMLSAA--LLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKV--TLPPGR----HKI 393
T+L+AA L G ++ VLELNAS++RGI VVR K+K FAQ V T P G+ KI
Sbjct: 82 TILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKI 141
Query: 394 VILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
+ILDEADSMT AQ ALRRTME S TTRF L N R
Sbjct: 142 IILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSR 180
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Frame = +2
Query: 53 KQVKPSSSKSTN-------LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAG 211
K KPSSS S+ +PW+EKYRP+ D++ E+ V+ L + + PN++ G
Sbjct: 14 KAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYG 73
Query: 212 PPGVGKTTTILCLAQ 256
PPG GKT+TIL A+
Sbjct: 74 PPGTGKTSTILAAAR 88
>UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2;
Oligohymenophorea|Rep: ATPase, AAA family protein -
Tetrahymena thermophila SB210
Length = 373
Score = 87.4 bits (207), Expect = 3e-16
Identities = 51/98 (52%), Positives = 63/98 (64%), Gaps = 7/98 (7%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSF-KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR------ 384
K + L G +F K+ +LELNAS+DRGI +VR+KIK FAQQ V+ P +
Sbjct: 88 KTSSILAFAKQLYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPN 147
Query: 385 HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
KI+ILDEADSMT AQ ALRR +E SSTTRF + N
Sbjct: 148 FKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICN 185
Score = 63.3 bits (147), Expect = 6e-09
Identities = 25/69 (36%), Positives = 42/69 (60%)
Frame = +2
Query: 50 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 229
+++ K + LPW+EKYRP +++ E+ + L +GN P++I+ GPPG GK
Sbjct: 29 EEETKTEELNNNLLPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGK 88
Query: 230 TTTILCLAQ 256
T++IL A+
Sbjct: 89 TSSILAFAK 97
Score = 53.2 bits (122), Expect = 7e-06
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI +IIEP+ SRC R+ + + K+ EIC E++ Y +E + ++ +
Sbjct: 180 FCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEICKTEDIEYEKEALEKLIKISN 239
Query: 660 GDLRSALNNLQSTA 701
GDLR ++N LQS +
Sbjct: 240 GDLRKSVNLLQSAS 253
>UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-182 - Ectocarpus siliculosus virus 1
Length = 326
Score = 87.0 bits (206), Expect = 4e-16
Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 4/95 (4%)
Frame = +1
Query: 226 KNDDYTMLSAALLGV-SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-LPPG--RHKI 393
K L+ LLG + ++ VLELNAS++RG+DVVR+KIK F++ ++ PG K+
Sbjct: 48 KTSTILALARTLLGEGNMRERVLELNASDERGLDVVRDKIKTFSKMSISSFQPGCPPFKL 107
Query: 394 VILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
VILDEAD+MT AQ ALRRTME +S TRF L N
Sbjct: 108 VILDEADTMTADAQSALRRTMETHSVVTRFCLVCN 142
Score = 60.5 bits (140), Expect = 4e-08
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
PW+EKYRP+ D+V ++ L KTG+ P+++ GPPG GKT+TIL LA+
Sbjct: 3 PWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALAR 57
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/91 (30%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY---TEEGVSAVVF 650
FC+ +II P+ SRCA R+S L+ + +++ IC +EN+ + + + A+V
Sbjct: 137 FCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERENIIFENCSRSVLDAIVK 196
Query: 651 TAQGDLRSALNNLQSTAQGFGHISPDNVFKV 743
+++GD+RSA+N LQ+ +Q ++P+++ ++
Sbjct: 197 SSRGDMRSAVNLLQTVSQQ-PRVTPESIVEI 226
>UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8142-PA
- Apis mellifera
Length = 310
Score = 85.8 bits (203), Expect = 1e-15
Identities = 54/100 (54%), Positives = 64/100 (64%), Gaps = 10/100 (10%)
Frame = +1
Query: 241 TMLSAA--LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKV--------TLPPGRHK 390
T+L+AA L G +K+ VLELNAS++RGI VVR KIK FAQ + PP K
Sbjct: 81 TILAAARQLFGSLYKERVLELNASDERGIQVVREKIKSFAQLTAGGMRDDGKSCPP--FK 138
Query: 391 IVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
I++LDEADSMT AQ ALRRTME S +TRF L N R
Sbjct: 139 IIVLDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSR 178
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 47 EKKQVKPSSSKSTNL----PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGP 214
E K+V S SK PW+EKYRP+ +D+V + V L K G+ PN++ GP
Sbjct: 14 EFKKVSNSRSKEERSGPAPPWVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGP 73
Query: 215 PGVGKTTTILCLAQ 256
PG GKT+TIL A+
Sbjct: 74 PGTGKTSTILAAAR 87
Score = 35.1 bits (77), Expect = 1.8
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENL 614
FC+ IIEP+ SRC R+ L + +I+ ++ IC +E+L
Sbjct: 169 FCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDL 213
>UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5;
Fungi/Metazoa group|Rep: DNA replication factor,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 373
Score = 85.8 bits (203), Expect = 1e-15
Identities = 45/91 (49%), Positives = 57/91 (62%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L+ L G +++ +LELNAS+DRGIDVVR +IK FA KV G K+VILD
Sbjct: 100 KTSTVLALARRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILD 158
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAAN 498
EAD MT AQ ALRR +E ++ RF + N
Sbjct: 159 EADMMTQAAQSALRRVIEQHTKNVRFCILCN 189
Score = 71.7 bits (168), Expect = 2e-11
Identities = 27/56 (48%), Positives = 41/56 (73%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
LPW+EKYRP + DD+V ++D S + F + G P++++ GPPG GKT+T+L LA+
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALAR 109
Score = 56.4 bits (130), Expect = 7e-07
Identities = 30/86 (34%), Positives = 48/86 (55%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI +I IQSRC R+S L + +I KV E+ KE ++ T++G A++ ++
Sbjct: 184 FCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDAILKLSR 243
Query: 660 GDLRSALNNLQSTAQGFGHISPDNVF 737
GD+R ALN LQ+ + + V+
Sbjct: 244 GDMRRALNVLQACHAAYDIVDETAVY 269
>UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-87 - Ectocarpus siliculosus virus 1
Length = 324
Score = 85.4 bits (202), Expect = 1e-15
Identities = 34/80 (42%), Positives = 56/80 (70%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRCA+LR+S++ DAQ+ ++ ++C+ + Y G+ A+ A GD+RSA+N+
Sbjct: 147 KIIEPIQSRCAILRFSKVDDAQLRLRIRQVCDMAGVEYDPGGIGALACVADGDVRSAINS 206
Query: 687 LQSTAQGFGHISPDNVFKVC 746
L S GF ++ +NV++ C
Sbjct: 207 LASIVSGFRRLTSENVYRTC 226
Score = 81.4 bits (192), Expect = 2e-14
Identities = 48/101 (47%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Frame = +1
Query: 214 SWCWKNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKV-TLP-PGRH 387
S C K +L ++ + +L L++ ++RGID VR +K FA+ +V T P P
Sbjct: 47 SGCGKTVCVDILCNTMIPENRGARMLRLSSFDERGIDNVRTTVKNFARGRVGTEPTPTIA 106
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
KIV+LDEADSMT GA QALRR M++YSSTTRF + NNS +
Sbjct: 107 KIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNSTK 147
Score = 56.8 bits (131), Expect = 5e-07
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Frame = +2
Query: 83 TNLPWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKT--TTILC 247
T PW+EKYRP F ++VGN+ ++S L+ + AK + P+++I GP G GKT ILC
Sbjct: 2 TAQPWVEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPHLLICGPSGCGKTVCVDILC 59
>UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Activator 1
41 kDa subunit - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 402
Score = 85.4 bits (202), Expect = 1e-15
Identities = 51/101 (50%), Positives = 64/101 (63%), Gaps = 10/101 (9%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR------ 384
K L+ L G + +K VLELNAS++RGI +VR KIK FA+ V+ P
Sbjct: 81 KTSTILALAKQLYGPNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYP 140
Query: 385 ---HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
+KI+ILDEADSMT+ AQ ALRRTME Y++ TRFAL N
Sbjct: 141 CPPYKIIILDEADSMTNDAQSALRRTMETYANITRFALVCN 181
Score = 67.7 bits (158), Expect = 3e-10
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +2
Query: 62 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 241
K K + PW+EKYRP+ DD+ + V L TGN P+++ GPPG GKT+TI
Sbjct: 26 KYDEDKLHHTPWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTI 85
Query: 242 LCLAQ 256
L LA+
Sbjct: 86 LALAK 90
Score = 42.3 bits (95), Expect = 0.012
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEG-----VSAVVFTAQGDLRS 674
II+P+ SRC+ R+ L++ L ++ I +ENL E+G ++ V+ + GD+R
Sbjct: 186 IIDPLASRCSKFRFKLLNNENSLNRLKYIAKEENLHLDEKGAPDEVLNEVLRISNGDMRK 245
Query: 675 ALNNLQSTAQ 704
A+ LQS ++
Sbjct: 246 AITYLQSASK 255
>UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 85.0 bits (201), Expect = 2e-15
Identities = 48/86 (55%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSM 420
L +L G F+ V ELNAS++RGID VR+ IK FA + +P G+ KIVILDEADSM
Sbjct: 61 LCRSLFGDDFRLRVKELNASDERGIDAVRSSIKEFAS--LAVPNGKIPFKIVILDEADSM 118
Query: 421 TDGAQQALRRTMELYSSTTRFALAAN 498
T AQ ALRR +E YSS TRF + N
Sbjct: 119 TSAAQNALRRIIETYSSVTRFIIICN 144
Score = 70.9 bits (166), Expect = 3e-11
Identities = 30/62 (48%), Positives = 40/62 (64%)
Frame = +2
Query: 71 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
S + NLPW+EKYRP+ DDIV E+ V L +TG+ P++I GPPG GKT+ L L
Sbjct: 2 SKTADNLPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALAL 61
Query: 251 AQ 256
+
Sbjct: 62 CR 63
Score = 43.6 bits (98), Expect = 0.005
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY-TEEGVSAVVFTAQGDLRSALN 683
+II+PI SRCA R+ L I+ ++ +I +NLS +E+ +V + GDLR A+
Sbjct: 148 KIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQNLSVDSEDTYETLVNISGGDLRKAIT 207
Query: 684 NLQSTA 701
QS A
Sbjct: 208 FAQSAA 213
>UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kDa
SUBUNIT; n=2; Microsporidia|Rep: REPLICATION FACTOR C
(ACTIVATOR 1) 37kDa SUBUNIT - Encephalitozoon cuniculi
Length = 309
Score = 85.0 bits (201), Expect = 2e-15
Identities = 48/85 (56%), Positives = 60/85 (70%)
Frame = +1
Query: 244 MLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 423
+L+ LLG K+ +LELNAS++RGID VR IK FAQ++V KI+ILDEADSMT
Sbjct: 54 ILARRLLGN--KEGLLELNASDERGIDTVRTTIKSFAQRRVK--DCEFKIIILDEADSMT 109
Query: 424 DGAQQALRRTMELYSSTTRFALAAN 498
AQQA+RR ME++SS RF L N
Sbjct: 110 TTAQQAMRRVMEIHSSECRFILICN 134
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/79 (39%), Positives = 47/79 (59%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+I EPIQSRCA+LR+ R+ + IL ++ EI E + T E + VV + GD+R +LN
Sbjct: 138 KIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEALDLVVELSDGDMRQSLNI 197
Query: 687 LQSTAQGFGHISPDNVFKV 743
LQ+ G + D + K+
Sbjct: 198 LQACINSPGTVDQDYIIKI 216
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +2
Query: 98 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+ KY+P DIVGNE T+ +++ ++ + P+++ GPPG GKTT LA+
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILAR 57
>UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34;
Eukaryota|Rep: Replication factor C subunit 4 - Homo
sapiens (Human)
Length = 363
Score = 84.6 bits (200), Expect = 2e-15
Identities = 56/99 (56%), Positives = 63/99 (63%), Gaps = 9/99 (9%)
Frame = +1
Query: 241 TMLSAA--LLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPPGRHKI 393
T+L+AA L G F+ VLELNAS++RGI VVR K+K FAQ V+ P KI
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKI 146
Query: 394 VILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
VILDEADSMT AQ ALRRTME S TTRF L N R
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSR 185
Score = 61.7 bits (143), Expect = 2e-08
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +2
Query: 71 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
+ K+ +PW+EKYRP+ D++ E+ V+ L + + PN++ GPPG GKT+TIL
Sbjct: 32 NKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAA 91
Query: 251 AQ 256
A+
Sbjct: 92 AR 93
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ IIEP+ SRC+ R+ LSD ++++I KEN+ ++EG++ +V ++
Sbjct: 176 FCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSE 235
Query: 660 GDLRSALNNLQSTAQ 704
GDLR A+ LQS +
Sbjct: 236 GDLRKAITFLQSATR 250
>UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C small
subunit - Methanosphaera stadtmanae (strain DSM 3091)
Length = 321
Score = 84.2 bits (199), Expect = 3e-15
Identities = 45/88 (51%), Positives = 59/88 (67%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 426
L+ +LLG ++ LELNAS+ RGID VRN+IK F + K P R I+ LDE D+MT
Sbjct: 56 LAKSLLGEYWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGAPFR--IIFLDEVDNMTK 113
Query: 427 GAQQALRRTMELYSSTTRFALAANNSER 510
AQQALRR ME+Y+ T+ F L+ N S +
Sbjct: 114 DAQQALRREMEMYTKTSSFILSCNYSSK 141
Score = 69.7 bits (163), Expect = 7e-11
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ-LSSE 268
PW+EKYRPQT DD+VG E V RL + + + PNI+ G GVGKTT L LA+ L E
Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGE 63
Query: 269 Y 271
Y
Sbjct: 64 Y 64
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/90 (31%), Positives = 54/90 (60%)
Frame = +3
Query: 474 NSFCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFT 653
+SF +S +II+PIQSRCA+ R+S + A I+ ++ I ++E + + + +V+
Sbjct: 130 SSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQSALENIVYF 189
Query: 654 AQGDLRSALNNLQSTAQGFGHISPDNVFKV 743
QGD+R ++N LQ++ ++ + V+ V
Sbjct: 190 TQGDMRKSINILQASTTTENTVTEEAVYDV 219
>UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) (PabRFC
small subunit) [Contains: Pab RFC-1 intein; Pab RFC-2
intein]; n=2; Euryarchaeota|Rep: Replication factor C
small subunit (RFC small subunit) (Clamp loader small
subunit) (PabRFC small subunit) [Contains: Pab RFC-1
intein; Pab RFC-2 intein] - Pyrococcus abyssi
Length = 1437
Score = 83.8 bits (198), Expect = 4e-15
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 426
L+ L G +++ LELNAS++RGI+V+R K+K FA+ K + KI+ LDEAD++T
Sbjct: 567 LARELFGENWRHNFLELNASDERGINVIREKVKEFARTK-PIGGASFKIIFLDEADALTQ 625
Query: 427 GAQQALRRTMELYSSTTRFALA 492
AQQALRRTME++SS RF L+
Sbjct: 626 DAQQALRRTMEMFSSNVRFILS 647
Score = 74.1 bits (174), Expect = 3e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRCA+ R+ L+D I ++ I E L TEEG+ A+++ A+GD+R A+N
Sbjct: 1261 KIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINI 1320
Query: 687 LQSTAQGFGHISPDNVFKV 743
LQ+ A I+ +NVF V
Sbjct: 1321 LQAAAALDRKITDENVFLV 1339
Score = 69.7 bits (163), Expect = 7e-11
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 238
PW+EKYRPQ ++IVG E V RL + KTG+ P+++ AGPPGVGK T
Sbjct: 16 PWVEKYRPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep:
F8K7.11 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 319
Score = 83.4 bits (197), Expect = 5e-15
Identities = 49/86 (56%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPPGRHKIVILDEADSMTDGA 432
+K VLELNAS+DRGI+VVR KIK FA V P KI+ILDEADSMT+ A
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDA 131
Query: 433 QQALRRTMELYSSTTRFALAANNSER 510
Q ALRRTME YS TRF N R
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISR 157
Score = 59.7 bits (138), Expect = 8e-08
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA-QLSSE 268
PW+EKYRP+ D+ E+ V L +T + P+++ GPPG GKTTT L +A QL
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 269 YLSKT 283
L K+
Sbjct: 70 ELYKS 74
Score = 57.2 bits (132), Expect = 4e-07
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
IIEP+ SRCA R+ LS+ + +++ ICN+E LS E +S + +QGDLR A+ L
Sbjct: 158 IIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYL 217
Query: 690 Q 692
Q
Sbjct: 218 Q 218
>UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 325
Score = 82.6 bits (195), Expect = 9e-15
Identities = 42/90 (46%), Positives = 62/90 (68%)
Frame = +1
Query: 241 TMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 420
T ++ L G +++ LELNAS++RGIDVVR++IK FA + + ++I+ LDEAD++
Sbjct: 65 TAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADAL 122
Query: 421 TDGAQQALRRTMELYSSTTRFALAANNSER 510
T AQ ALRRTME +S+ RF L+ N S +
Sbjct: 123 TSDAQSALRRTMEQFSNNVRFILSCNYSSQ 152
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/79 (37%), Positives = 51/79 (64%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II+PIQSRCAV R+S L+D + ++ I +E++ TE+G+ A+V+ A GD+R A+N
Sbjct: 152 QIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAING 211
Query: 687 LQSTAQGFGHISPDNVFKV 743
LQ+ + + V+ +
Sbjct: 212 LQAASVSGDTVDESAVYAI 230
Score = 60.9 bits (141), Expect = 3e-08
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
WIEKYRPQT DD++G+E+ V RL + + +++ +GP G GKTT +A+
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIAR 69
>UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7;
Saccharomycetales|Rep: Replication factor C subunit 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 353
Score = 82.2 bits (194), Expect = 1e-14
Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 9/83 (10%)
Frame = +1
Query: 277 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSMTDG 429
K +LELNAS++RGI +VR K+K FA+ V+ P +KI+ILDEADSMT
Sbjct: 89 KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD 148
Query: 430 AQQALRRTMELYSSTTRFALAAN 498
AQ ALRRTME YS TRF L N
Sbjct: 149 AQSALRRTMETYSGVTRFCLICN 171
Score = 62.1 bits (144), Expect = 1e-08
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
PW+EKYRP+ D++ + V+ L K+ N P+++ GPPG GKT+TIL L +
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80
Score = 41.5 bits (93), Expect = 0.021
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ II+P+ SRC+ R+ L + + ++ I +EN+ + + ++ +
Sbjct: 166 FCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 225
Query: 660 GDLRSALNNLQSTAQG 707
GDLR + LQS ++G
Sbjct: 226 GDLRRGITLLQSASKG 241
>UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1;
Ajellomyces capsulatus NAm1|Rep: Activator 1 37 kDa
subunit - Ajellomyces capsulatus NAm1
Length = 231
Score = 81.4 bits (192), Expect = 2e-14
Identities = 49/103 (47%), Positives = 63/103 (61%), Gaps = 13/103 (12%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP-------- 378
K L+ +L G ++ +LELNAS++RGI +VR KIK FA+ +++ PP
Sbjct: 17 KTSTILALAKSLYGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYRE 76
Query: 379 ----GRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAA 495
KI+ILDEADSMT AQ ALRRTME YS TRF L+A
Sbjct: 77 KYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLSA 119
Score = 33.9 bits (74), Expect = 4.3
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 191 PNIIIAGPPGVGKTTTILCLAQ 256
P+++ GPPG GKT+TIL LA+
Sbjct: 5 PHMLFYGPPGTGKTSTILALAK 26
>UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=13;
cellular organisms|Rep: Replication factor C small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 338
Score = 81.4 bits (192), Expect = 2e-14
Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALR 447
+++ ELNAS++RGID+VRNKIK FA+ T P G KI+ LDEAD++T AQ ALR
Sbjct: 76 WRENFTELNASDERGIDIVRNKIKNFAK---TAPMGGAPFKIIFLDEADALTSDAQSALR 132
Query: 448 RTMELYSSTTRFALAANNSER 510
RTME +SS RF L+ N S +
Sbjct: 133 RTMEKFSSNCRFILSCNYSSK 153
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/65 (50%), Positives = 48/65 (73%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRCAV R+ RLSD I ++ I +++LS T+ G A+++ AQGD+R A+N+
Sbjct: 153 KIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNS 212
Query: 687 LQSTA 701
LQ+ A
Sbjct: 213 LQAAA 217
Score = 63.7 bits (148), Expect = 5e-09
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
WIEKYRP + + G E+T+ RL + T N P+++ +GPPGVGKT + + +A+
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAR 68
>UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 329
Score = 80.6 bits (190), Expect = 4e-14
Identities = 42/81 (51%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALR 447
FK+ VLELNASN RGI++VR +K +A Q VT G +K++ILDE+D++T AQ ALR
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESDALTPDAQTALR 125
Query: 448 RTMELYSSTTRFALAANNSER 510
R ME ++ TRF L N R
Sbjct: 126 RMMEDFTKNTRFCLICNYISR 146
Score = 59.7 bits (138), Expect = 8e-08
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
W EKYRP+T DD+ G E+ + L +G PN++ GPPG GKTT+IL +A
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVA 58
Score = 59.7 bits (138), Expect = 8e-08
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ I+ PI SRC R+S L + ++ IC KE S T E + AV ++
Sbjct: 137 FCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEAIQAVSILSE 196
Query: 660 GDLRSALNNLQSTAQGFGH-ISPDNVFKV 743
GDLR + LQ +QG H ++P ++ V
Sbjct: 197 GDLRYGIGLLQKLSQGINHSVTPQDISNV 225
>UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51;
Eukaryota|Rep: Replication factor C subunit 5 - Homo
sapiens (Human)
Length = 340
Score = 80.6 bits (190), Expect = 4e-14
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = +2
Query: 50 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 229
K+Q +P+++K NLPW+EKYRPQT +D++ ++D +S + F P++++ GPPG GK
Sbjct: 7 KQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGK 66
Query: 230 TTTIL-CLAQL 259
T+TIL C QL
Sbjct: 67 TSTILACAKQL 77
Score = 78.6 bits (185), Expect = 2e-13
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 453
F VLELNAS+DRGID++R I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 141
Query: 454 MELYSSTTRFALAAN 498
+E ++ TRF L N
Sbjct: 142 IEKFTENTRFCLICN 156
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/86 (32%), Positives = 50/86 (58%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ +II +QSRC R+ L+ ++ ++ + +E + +E+G+ A+V +
Sbjct: 151 FCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSS 210
Query: 660 GDLRSALNNLQSTAQGFGHISPDNVF 737
GD+R ALN LQST FG ++ + V+
Sbjct: 211 GDMRRALNILQSTNMAFGKVTEETVY 236
>UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: activator 1 36 kda
subunit - Entamoeba histolytica HM-1:IMSS
Length = 325
Score = 79.8 bits (188), Expect = 7e-14
Identities = 42/80 (52%), Positives = 53/80 (66%)
Frame = +1
Query: 259 LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 438
L G F VLELNAS++RGIDVVR++IK FA + TL K +ILDE+D +T AQ
Sbjct: 60 LCGTKFSALVLELNASDERGIDVVRDQIKSFASTR-TLYTNCTKFIILDESDKLTKDAQN 118
Query: 439 ALRRTMELYSSTTRFALAAN 498
ALRRT+E +S+ RF N
Sbjct: 119 ALRRTLEQFSANCRFIFICN 138
Score = 62.9 bits (146), Expect = 8e-09
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+LPW+EKYRP T D I G+E + L F P+++ GPPG GKTTT L + +
Sbjct: 2 SLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVK 58
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIE-ICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
I IQSRCA +R+ LS L K++E I KE + E+ +++ ++GD RS +N
Sbjct: 143 ITPAIQSRCAKMRFGPLS-PDALTKIVENITMKEGMEIDEDAKKSIIEISKGDARSIINT 201
Query: 687 LQSTAQGFGHISPDNVF 737
LQ+ + I+ ++
Sbjct: 202 LQALSMTCKQITNSTLY 218
>UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 79.4 bits (187), Expect = 9e-14
Identities = 43/88 (48%), Positives = 57/88 (64%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 426
+S L G +VLELNAS++RGID VR +IK FA + P + K++ILDE+D+MT
Sbjct: 60 ISHQLYGNDTSMSVLELNASDERGIDTVRMRIKDFASSRSLFGP-KIKLIILDESDAMTG 118
Query: 427 GAQQALRRTMELYSSTTRFALAANNSER 510
AQ ALRR ME ++S RF L N E+
Sbjct: 119 AAQAALRRIMEQFTSNVRFILICNYPEK 146
Score = 61.3 bits (142), Expect = 2e-08
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
LPW+EKYRP DD+V +E +S + F P++ GPPG GKTTT + ++
Sbjct: 7 LPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAIS 61
>UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mkn RFC intein]; n=1; Methanopyrus kandleri|Rep:
Replication factor C small subunit (RFC small subunit)
(Clamp loader small subunit) [Contains: Mkn RFC intein]
- Methanopyrus kandleri
Length = 635
Score = 78.2 bits (184), Expect = 2e-13
Identities = 31/56 (55%), Positives = 39/56 (69%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+PW+EKYRP+ DDIV E V RL + G+ PN++ AGPPG GKTT LCLA+
Sbjct: 11 IPWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLAR 66
Score = 75.8 bits (178), Expect = 1e-12
Identities = 38/70 (54%), Positives = 51/70 (72%)
Frame = +1
Query: 295 LNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSST 474
L+ S++RGIDV+R K+K FA+ + + R KI+ LDEAD++T +QQALRR ME+YS
Sbjct: 385 LHNSDERGIDVIRTKVKNFARTR-PMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDA 443
Query: 475 TRFALAANNS 504
RF LAAN S
Sbjct: 444 CRFILAANYS 453
Score = 66.9 bits (156), Expect = 5e-10
Identities = 29/78 (37%), Positives = 51/78 (65%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
II+PIQSRC V ++++L ++ I ++ +I E + TE+ + A+V+ ++GD+R A+N L
Sbjct: 456 IIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYVSEGDMRRAINVL 515
Query: 690 QSTAQGFGHISPDNVFKV 743
Q+ A I D VF++
Sbjct: 516 QAAAALGREIDEDTVFQI 533
>UniRef50_Q2UJ68 Cluster: Replication factor C; n=15;
Pezizomycotina|Rep: Replication factor C - Aspergillus
oryzae
Length = 398
Score = 77.8 bits (183), Expect = 3e-13
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 11/91 (12%)
Frame = +1
Query: 271 SFKDAVLELNASNDRGIDVVRNKIKMFAQQK--VTLPP---------GRHKIVILDEADS 417
+ + VLELNAS+DRGIDVVR +IK FA K ++ P +K++ILDEAD+
Sbjct: 105 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIILDEADA 164
Query: 418 MTDGAQQALRRTMELYSSTTRFALAANNSER 510
MT AQ ALRR ME Y++ TRF + AN + +
Sbjct: 165 MTATAQMALRRIMEKYTANTRFCIIANYTHK 195
Score = 72.9 bits (171), Expect = 8e-12
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
NLPW+EKYRP T DD+ G++D ++ + F P++++ GPPG GKT+TIL LA+
Sbjct: 42 NLPWVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALAR 98
Score = 42.7 bits (96), Expect = 0.009
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI + ++ + SRC R+S L + I + V + KE + E V ++V ++
Sbjct: 186 FCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDLVIEKEEVKIQPEAVDSLVKLSK 245
Query: 660 GDLRSALNNLQS 695
GD+R ALN LQ+
Sbjct: 246 GDMRRALNVLQA 257
>UniRef50_Q9GR09 Cluster: Replication factor C3; n=9;
Aconoidasida|Rep: Replication factor C3 - Plasmodium
falciparum
Length = 344
Score = 75.4 bits (177), Expect = 1e-12
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = +1
Query: 259 LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQK---VTLPPGRHKIVILDEADSMTDG 429
L G VLELNAS+DRGI+V+R++IK FA+ K T K++ILDEAD MT
Sbjct: 70 LYGDKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYP 129
Query: 430 AQQALRRTMELYSSTTRFALAAN 498
AQ A+RR ME Y+ RF L N
Sbjct: 130 AQNAMRRIMENYAKNVRFCLLCN 152
Score = 66.5 bits (155), Expect = 7e-10
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
PW+EKYRP +DI+ +E +S + F + G P++++ GPPG GKT+TIL + +
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCK 68
Score = 49.6 bits (113), Expect = 8e-05
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ +I IQSRC R++ L + K ++I EN++ TE G+ +++
Sbjct: 147 FCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGGIDSLIRVGH 206
Query: 660 GDLRSALNNLQ 692
GD+R LN LQ
Sbjct: 207 GDMRRILNCLQ 217
>UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2;
Bilateria|Rep: Clone ZZD636 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 364
Score = 75.4 bits (177), Expect = 1e-12
Identities = 47/99 (47%), Positives = 59/99 (59%), Gaps = 15/99 (15%)
Frame = +1
Query: 247 LSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT---------------LPPG 381
L+ L G + + VLELNAS++RGI V+R K+K FA V+ +PP
Sbjct: 78 LARQLFGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPP- 136
Query: 382 RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
+K++ILDEADSMT AQ ALRRTME TTRF L N
Sbjct: 137 -YKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCN 174
Score = 60.5 bits (140), Expect = 4e-08
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
++PW+EKYRP+T D++ + VS L + PN++ GPPG GKT+ IL LA+
Sbjct: 24 HIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALAR 80
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC++ IIEPI SRCA R+ L + A++ I + ENLS T+E + ++ +
Sbjct: 169 FCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARARLRYIADAENLSVTDETLDHLLSLCR 228
Query: 660 GDLRSALNNLQSTAQ 704
GDLR + LQ Q
Sbjct: 229 GDLRQGITMLQCVHQ 243
>UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161,
whole genome shotgun sequence; n=2;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_161, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 340
Score = 75.4 bits (177), Expect = 1e-12
Identities = 28/62 (45%), Positives = 45/62 (72%)
Frame = +2
Query: 71 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
+ K+ N+PWIEKYRP T D+++ +E+ V+ + F + PN+++ GPPG GKT+TI+ L
Sbjct: 9 NKKNKNIPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIAL 68
Query: 251 AQ 256
A+
Sbjct: 69 AK 70
Score = 73.3 bits (172), Expect = 6e-12
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLPPGRH---KIVILDEADSMTDGAQQA 441
+ VLELNAS++RGI+ VR IK FA+ Q T ++ K+VILDEAD+MT AQ A
Sbjct: 77 YNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKNTSIKLVILDEADAMTAAAQFA 136
Query: 442 LRRTMELYSSTTRFALAANN 501
LRR +E Y+ TTRF N+
Sbjct: 137 LRRIIEKYAKTTRFCFICNH 156
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II IQSRC ++ ++S +++ IC E++ E+ + +V GD+R +N
Sbjct: 159 QIIPAIQSRCTRFKFKQISLDVASSRIKYICENESIPLNEQAIKSVFELCSGDMRRVVNM 218
Query: 687 LQS 695
LQS
Sbjct: 219 LQS 221
>UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative;
n=1; Babesia bovis|Rep: Replication factor C3 protein,
putative - Babesia bovis
Length = 348
Score = 74.9 bits (176), Expect = 2e-12
Identities = 45/105 (42%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG-------- 381
K +S L G V+ELNAS++RGI+ VR +IK FA+ T G
Sbjct: 53 KTSTIMAVSRYLYGSHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGP 112
Query: 382 --RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
K++ILDEAD MT+ AQ +LRR ME+YSS RF L N R
Sbjct: 113 RTNLKLIILDEADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNR 157
Score = 71.3 bits (167), Expect = 2e-11
Identities = 26/56 (46%), Positives = 43/56 (76%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+PW+EKYRP++F DI+ ++D +S L FA+ G P+++ GPPG GKT+TI+ +++
Sbjct: 7 VPWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSR 62
Score = 49.6 bits (113), Expect = 8e-05
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ II PIQSRC R+ L + + + +I E L+ +E + + Q
Sbjct: 148 FCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIAKAEGLTVSECALDTLAEIGQ 207
Query: 660 GDLRSALNNLQSTAQGFG 713
GD+R LN LQ TA G
Sbjct: 208 GDMRRVLNCLQVTAMSIG 225
>UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Replication factor C
- Candidatus Nitrosopumilus maritimus SCM1
Length = 316
Score = 74.9 bits (176), Expect = 2e-12
Identities = 44/100 (44%), Positives = 59/100 (59%)
Frame = +1
Query: 202 YSWTSWCWKNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG 381
+S ++ K +S +LG KD LELNAS++RGI +VR K+K F++ +
Sbjct: 44 FSGSAGVGKTTTALCISRQILGDYAKDYTLELNASDERGIGMVREKVKKFSRY-AGMADV 102
Query: 382 RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANN 501
KI+ILDEAD MT AQ ALRR +E + RF L ANN
Sbjct: 103 PFKIIILDEADEMTSDAQTALRRIIEDTAKICRFILIANN 142
Score = 65.3 bits (152), Expect = 2e-09
Identities = 30/76 (39%), Positives = 51/76 (67%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II+PIQSRCA +++ + + ++ ++ EI KE + ++G+ A+ ++GDLR A+N
Sbjct: 145 KIIDPIQSRCATFKFTAVPEEDVIKRLEEIAKKEKVKADKKGLKAIYDYSEGDLRHAINL 204
Query: 687 LQSTAQGFGHISPDNV 734
+Q+TA G IS DNV
Sbjct: 205 MQATA-SLGSISEDNV 219
Score = 51.2 bits (117), Expect = 3e-05
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTG-NAPNIIIAGPPGVGKTTTILCLA-QLSSE 268
W+EKYRP ++V + + L K + P+++ +G GVGKTTT LC++ Q+ +
Sbjct: 7 WVEKYRPMKLSEVVNQTEIIGSLEALIKDPTDMPHLLFSGSAGVGKTTTALCISRQILGD 66
Query: 269 Y 271
Y
Sbjct: 67 Y 67
>UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1;
Cenarchaeum symbiosum|Rep: Replication factor C small
subunit - Cenarchaeum symbiosum
Length = 311
Score = 74.9 bits (176), Expect = 2e-12
Identities = 43/100 (43%), Positives = 60/100 (60%)
Frame = +1
Query: 202 YSWTSWCWKNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG 381
+S ++ K ++ +LG +D +LELNAS++RGI +VR+K+K F+
Sbjct: 39 FSGSAGVGKTTTALCIARQVLGPHIQDNLLELNASDERGIGMVRDKVKRFSNF-AAFEEI 97
Query: 382 RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANN 501
KI+ILDEAD MT AQ ALRRT+E S RF + ANN
Sbjct: 98 PFKIIILDEADEMTADAQTALRRTIEDASKICRFIIVANN 137
Score = 59.7 bits (138), Expect = 8e-08
Identities = 29/76 (38%), Positives = 50/76 (65%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II+PIQSRCAV +++ + + + +A++ +I E S EEG+ V ++GDLR A+N
Sbjct: 140 KIIDPIQSRCAVYKFTSIPEKEAMAQLKKIAKGEKASIDEEGLKEVYEQSEGDLRHAINI 199
Query: 687 LQSTAQGFGHISPDNV 734
LQ+ A G ++ ++V
Sbjct: 200 LQAAASS-GAVTAESV 214
Score = 56.0 bits (129), Expect = 9e-07
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
W+EKYRP+ D+V ++ + + A+ G P+++ +G GVGKTTT LC+A+
Sbjct: 2 WVEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIAR 56
>UniRef50_Q5UP47 Cluster: Putative replication factor C small
subunit L499; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L499 -
Mimivirus
Length = 344
Score = 74.9 bits (176), Expect = 2e-12
Identities = 43/80 (53%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQK--VTLPPGRH---KIVILDEADSMTDGAQQALRR 450
+LELNASN+RGI+ VR KIK F K + LP G K+VILDE DSMT AQ LR+
Sbjct: 83 ILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQ 142
Query: 451 TMELYSSTTRFALAANNSER 510
T+E S TTRF L N+ ++
Sbjct: 143 TIEKNSGTTRFCLICNDIDK 162
Score = 64.5 bits (150), Expect = 3e-09
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA-QLSS 265
LPW+EKYRPQ D I+ N D + L F ++ P+++ GP G GKT+TI C A ++
Sbjct: 17 LPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYG 76
Query: 266 EYLS 277
+Y++
Sbjct: 77 KYIN 80
Score = 58.0 bits (134), Expect = 2e-07
Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA 701
+QSRCA R+S L++ + ++ +IC E + Y +E +++++ ++GD+RSA+N LQ
Sbjct: 167 LQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVN 226
Query: 702 QGF-GHISPDNVFKV 743
G I+ ++V+K+
Sbjct: 227 LVIGGSINTEDVYKI 241
>UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6;
Plasmodium|Rep: Replication factor C subunit 2 -
Plasmodium falciparum
Length = 330
Score = 73.7 bits (173), Expect = 4e-12
Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 11/87 (12%)
Frame = +1
Query: 271 SFKDAVLELNASNDRGIDVVRNKIKMF-----------AQQKVTLPPGRHKIVILDEADS 417
+ + VLELNAS+DRGI+VVR KIK + ++ K LP K+V+LDEAD
Sbjct: 66 NISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSW--KLVVLDEADM 123
Query: 418 MTDGAQQALRRTMELYSSTTRFALAAN 498
MT+ AQ ALRR +E+YS+ TRF L N
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICN 150
Score = 65.7 bits (153), Expect = 1e-09
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
N+PW+EKYRP+ DDIV + V L +T N P++I GPPG GKT+ I LA
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALA 58
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+I +PI SRC+ R+ + K++ IC EN+ ++ + ++ T +GDLR A++
Sbjct: 154 KISDPIFSRCSCYRFQSIPINIKKEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSI 213
Query: 687 LQ 692
LQ
Sbjct: 214 LQ 215
>UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC- 3 intein];
n=1; Methanocaldococcus jannaschii|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC- 3 intein] - Methanococcus jannaschii
Length = 1847
Score = 73.3 bits (172), Expect = 6e-12
Identities = 36/79 (45%), Positives = 51/79 (64%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II PIQSRCAV R+S L I K+ EI KE L+ TE G+ A+++ ++GD+R A+N
Sbjct: 1673 KIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINV 1732
Query: 687 LQSTAQGFGHISPDNVFKV 743
LQ+ A I + V+KV
Sbjct: 1733 LQTAAALSDVIDDEIVYKV 1751
Score = 65.7 bits (153), Expect = 1e-09
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 238
PW+EKYRP+T DDIVG ++ V RL + + + P+++ +GPPGVGK T
Sbjct: 8 PWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 56
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = +1
Query: 295 LNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSST 474
L+ S++RGIDV+R K+K FA+ K + KI+ LDE+D++T AQ ALRRTME YS
Sbjct: 1060 LHNSDERGIDVIRTKVKDFARTK-PIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDV 1118
Query: 475 TRFALA 492
RF L+
Sbjct: 1119 CRFILS 1124
>UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
3, putative - Leishmania infantum
Length = 364
Score = 72.5 bits (170), Expect = 1e-11
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = +2
Query: 53 KQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKT 232
+Q + + + +++LPW+EKYRP T + +V +ED +S L +GN P++++ GPPG GKT
Sbjct: 5 RQGEEAKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKT 64
Query: 233 TTILCLA 253
TTI A
Sbjct: 65 TTIKACA 71
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 15/87 (17%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTL---------------PPGRHKIVILDEADSM 420
VLE+NAS+DRGIDVVR + + FA P + K+VILDEAD M
Sbjct: 84 VLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFKLVILDEADQM 143
Query: 421 TDGAQQALRRTMELYSSTTRFALAANN 501
+ AQ ALRR +E Y+ RF + N+
Sbjct: 144 SHDAQAALRRVIEKYTRNVRFCILCNH 170
Score = 55.6 bits (128), Expect = 1e-06
Identities = 25/88 (28%), Positives = 51/88 (57%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI +II +QSRC R++ + + ++ ++ + +E + YT +G++A +
Sbjct: 164 FCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRLRFVAEQEGVKYTTDGLAAAFRLSH 223
Query: 660 GDLRSALNNLQSTAQGFGHISPDNVFKV 743
GDLR LN +Q++A ++ ++V++V
Sbjct: 224 GDLRRCLNTMQASALSANEVTEESVYRV 251
>UniRef50_Q5UQ47 Cluster: Putative replication factor C small
subunit R395; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit R395 -
Mimivirus
Length = 319
Score = 72.1 bits (169), Expect = 1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIE IQS C +LR+ +L+D QI + +IC E + Y E+G+ + + + GD+R ++N+
Sbjct: 143 KIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQGLRTICYISNGDMRKSIND 202
Query: 687 LQSTAQGFGHISPDNVFKVC 746
LQ TA F I+ + V K+C
Sbjct: 203 LQKTAFTFEKITKNLVLKIC 222
Score = 62.1 bits (144), Expect = 1e-08
Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA-Q 256
+ ++PWIEKYRP DD++ +++ ++ +F + ++II G PGVGKT+T+ C+A +
Sbjct: 2 TNSIPWIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKE 61
Query: 257 LSSEYLSK 280
L E +S+
Sbjct: 62 LLGEDMSQ 69
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/95 (29%), Positives = 44/95 (46%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K ++ LLG LE+NA+ DRG+ + I F K + KI++LD
Sbjct: 51 KTSTVRCIAKELLGEDMSQGYLEINAAEDRGVRSISTIIPPFC--KKVFAANKSKIILLD 108
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
EAD MT Q + ++ + T+F N+S +
Sbjct: 109 EADIMTSKCQYDINNMIKKFGRKTKFIFTCNDSSK 143
>UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 411
Score = 71.7 bits (168), Expect = 2e-11
Identities = 45/99 (45%), Positives = 57/99 (57%), Gaps = 25/99 (25%)
Frame = +1
Query: 277 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH----------------------- 387
K VLELNAS++RGI +VR K+K FA+Q++++ P +
Sbjct: 97 KSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCP 156
Query: 388 --KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
KI++LDEADSMT AQ ALRRTME YS TRF L N
Sbjct: 157 PFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCN 195
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Frame = +2
Query: 65 PSSSKSTNL--PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 238
P+S + +N PW+EKYRP+T ++ ++T+ L+ ++ N P+++ GPPG GKT+T
Sbjct: 23 PTSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTST 82
Query: 239 ILCLA-QLSSEYLSKT 283
IL LA QL L K+
Sbjct: 83 ILALAKQLYGPELMKS 98
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVS-AVVFTA 656
FC+ II+P+ SRC+ R+ L + +V +I E++ + GVS +V A
Sbjct: 190 FCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVK-LDAGVSEELVRVA 248
Query: 657 QGDLRSALNNLQSTAQGFG 713
GDLR A+ LQS A+ G
Sbjct: 249 DGDLRKAITFLQSAARLVG 267
>UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces
capsulatus NAm1|Rep: Activator 1 subunit 3 - Ajellomyces
capsulatus NAm1
Length = 366
Score = 71.7 bits (168), Expect = 2e-11
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +1
Query: 226 KNDDYTMLSAALLGV-SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 402
K L+ + GV + + VLELNAS+DRGIDV ++ G K++IL
Sbjct: 116 KTSTILALARRIYGVKNMRQMVLELNASDDRGIDVFVIHPFRYSLSNSESTLGAFKLIIL 175
Query: 403 DEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
DEAD+MT AQ ALRR ME Y++ TRF + AN + +
Sbjct: 176 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHK 211
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 98 IEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+EKYRP T +D V N + +F + P++++ GPPG GKT+TIL LA+
Sbjct: 74 VEKYRPNTLEDAVPNAPNIDWTNPLFVQ--RLPHLLLYGPPGTGKTSTILALAR 125
Score = 44.0 bits (99), Expect = 0.004
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI + ++ + SRC R+S L + I V ++ KE + E + ++V ++
Sbjct: 202 FCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKERVRIQPEAIDSLVQLSK 261
Query: 660 GDLRSALNNLQSTAQGFGHIS 722
GD+R ALN LQ+ H S
Sbjct: 262 GDMRRALNVLQACHASTPHPS 282
>UniRef50_Q5UQ72 Cluster: Putative replication factor C small
subunit L510; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L510 -
Mimivirus
Length = 363
Score = 71.3 bits (167), Expect = 2e-11
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 7/82 (8%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQ---KVTLPPGR----HKIVILDEADSMTDGA 432
F++ V+E NAS+DRGI+ VR KI A++ ++ L G +KI+ILDEADSMTD A
Sbjct: 69 FQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMTDEA 128
Query: 433 QQALRRTMELYSSTTRFALAAN 498
Q ALR +E YS+ TRF N
Sbjct: 129 QDALRVIIEQYSTATRFCFICN 150
Score = 53.2 bits (122), Expect = 7e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
++PWIEKYRP+ +DI +++ + K G + + GPPG GKT+ IL + +
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGR 62
Score = 39.9 bits (89), Expect = 0.065
Identities = 18/63 (28%), Positives = 39/63 (61%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+I + I+SRC+ + + +LSD ++ K+ +I KE++ + + ++ + GD+R A+
Sbjct: 154 KITDAIKSRCSSVYFKKLSDECMVEKLNDISLKESMELPKNILHTIIDVSNGDMRKAIML 213
Query: 687 LQS 695
LQ+
Sbjct: 214 LQN 216
>UniRef50_P34429 Cluster: Putative replication factor C subunit 5;
n=2; Caenorhabditis|Rep: Putative replication factor C
subunit 5 - Caenorhabditis elegans
Length = 368
Score = 70.9 bits (166), Expect = 3e-11
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +2
Query: 62 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 241
K +++ ++NLPW+EKYRP D++V +E V L F + P+++ GPPG GKTTT+
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 242 LCLAQ 256
L A+
Sbjct: 80 LAAAR 84
Score = 70.1 bits (164), Expect = 5e-11
Identities = 42/79 (53%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQK------VTLPPGR--HKIVILDEADSMTDGAQQA 441
VLELNAS++RGIDVVRN I FAQ K + G K+VILDEAD+MT AQ A
Sbjct: 96 VLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNA 155
Query: 442 LRRTMELYSSTTRFALAAN 498
LRR +E Y+ RF + N
Sbjct: 156 LRRVIEKYTDNVRFCIICN 174
Score = 60.1 bits (139), Expect = 6e-08
Identities = 30/87 (34%), Positives = 48/87 (55%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI I+ IQSRC R++ L I+ ++ I E L T +G A++ ++
Sbjct: 169 FCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSK 228
Query: 660 GDLRSALNNLQSTAQGFGHISPDNVFK 740
GD+R+ +N LQSTA F +S + V++
Sbjct: 229 GDMRTVINTLQSTAMSFDTVSENTVYQ 255
>UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5
(36kDa), probable; n=2; Ostreococcus|Rep: Rfc5
replication factor C subunit 5 (36kDa), probable -
Ostreococcus tauri
Length = 341
Score = 70.5 bits (165), Expect = 4e-11
Identities = 40/95 (42%), Positives = 55/95 (57%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L+ L + + VLELNAS+ RGI++VR++I+ FA K+VI+D
Sbjct: 61 KTSTVLALTRELYESNHSNMVLELNASDSRGINIVRDEIQSFASTARPFSSA-FKLVIMD 119
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
E DS+T AQ ALRR ME Y+ TRF L N + +
Sbjct: 120 ECDSLTKDAQFALRRIMEKYAQHTRFCLICNYASK 154
Score = 67.3 bits (157), Expect = 4e-10
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = +2
Query: 44 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGV 223
PEK + S+ K +LPW EKYRP ++V +E + + FA G P+++ GPPG
Sbjct: 2 PEKVSAEESTEK--HLPWTEKYRPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGT 59
Query: 224 GKTTTILCLAQ 256
GKT+T+L L +
Sbjct: 60 GKTSTVLALTR 70
Score = 39.5 bits (88), Expect = 0.086
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +3
Query: 468 QYNSFCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVV 647
Q+ FC+ +II IQSRC R++ + +L ++ + E + + + +
Sbjct: 141 QHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRLRHVVCSERVQISGASLQTIQ 200
Query: 648 FTAQGDLRSALNNLQS 695
+GD+R +LN LQS
Sbjct: 201 RLGEGDMRRSLNVLQS 216
>UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n=2;
Cryptosporidium|Rep: Replication factor C like AAA
ATpase - Cryptosporidium parvum Iowa II
Length = 335
Score = 70.1 bits (164), Expect = 5e-11
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Frame = +1
Query: 247 LSAALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH---------KIV 396
LS L G + +K+ +LELNAS++RGI VVR+KIK + +Q V KIV
Sbjct: 60 LSRELFGPNEYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIV 119
Query: 397 ILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
ILDEA+ MT AQ ALRR +E+ S TRF + N
Sbjct: 120 ILDEAEMMTADAQSALRRIIEVSSKNTRFVIICN 153
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +2
Query: 68 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 247
SS+ S+NL W+EKYRP DI ++D VS L+ K GN P+++ GPPG GKT+ +L
Sbjct: 1 SSTMSSNL-WVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLA 59
Query: 248 LAQ 256
L++
Sbjct: 60 LSR 62
Score = 58.0 bits (134), Expect = 2e-07
Identities = 27/69 (39%), Positives = 45/69 (65%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEP+ SRCA R+ +S + ++ IC++E++SY + + +V +QGDLR +N
Sbjct: 157 KIIEPLASRCAKFRFQPISANSQIERLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINI 216
Query: 687 LQSTAQGFG 713
LQS ++ FG
Sbjct: 217 LQSASELFG 225
>UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2;
Caenorhabditis|Rep: Replication factor C subunit 4 -
Caenorhabditis elegans
Length = 334
Score = 70.1 bits (164), Expect = 5e-11
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH----KIVILDEADSMTDGAQQA 441
F D VL+LNAS++RGI VVR KI+ F++ + KI+ILDE D+MT AQ A
Sbjct: 78 FHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAA 137
Query: 442 LRRTMELYSSTTRFALAANNSER 510
+RR +E +S TTRF L N R
Sbjct: 138 MRRVIEDFSKTTRFILICNYVSR 160
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
L W EKYRP+T DDI ++ V+ L + + P+++ GPPG GKT+ L +
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Score = 41.1 bits (92), Expect = 0.028
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
+I P+ SRCA R+ L + ++ IC+ E +++ + V+ ++GDLR A+ L
Sbjct: 161 LIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTL 220
Query: 690 QSTA 701
QS A
Sbjct: 221 QSLA 224
>UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2
homologue) , putative; n=3; Piroplasmida|Rep:
Replication factor C subunit (RPC2 homologue) , putative
- Theileria annulata
Length = 336
Score = 68.9 bits (161), Expect = 1e-10
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 9/83 (10%)
Frame = +1
Query: 277 KDAVLELNASNDRGIDVVRNKIKMFAQ-----QKVTLPPGR----HKIVILDEADSMTDG 429
++ VLELNAS++RGIDVVR++IK + + +V R +K++ILDEAD +T
Sbjct: 71 RERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMITAD 130
Query: 430 AQQALRRTMELYSSTTRFALAAN 498
AQ ALRR +E YSS +RF L N
Sbjct: 131 AQAALRRVIENYSSISRFILICN 153
Score = 58.4 bits (135), Expect = 2e-07
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
++PW+EKYRP+ D++ VS + +T N P++I GPPG GKT+ L +A+
Sbjct: 6 DVPWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMAR 62
Score = 38.7 bits (86), Expect = 0.15
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II PI SRC+V + + + ++ ICN+E +++ + ++ + + GD+R ++
Sbjct: 157 KIIGPIYSRCSVFHFKPIETNSQIDRLKYICNQEGITFDPKFLTTI---SSGDMRKSITI 213
Query: 687 LQ----STAQGFGHISPDNVFKV 743
LQ STA + I+ + ++ V
Sbjct: 214 LQVILGSTACLYNEITENAIYSV 236
>UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
2, putative - Leishmania major
Length = 354
Score = 68.1 bits (159), Expect = 2e-10
Identities = 42/91 (46%), Positives = 53/91 (58%), Gaps = 13/91 (14%)
Frame = +1
Query: 277 KDAVLELNASNDRGIDVVRNKIKMFAQ-------QKVTLPPGR------HKIVILDEADS 417
+ V ELNAS+DRGI VVR K+K+FAQ VT G+ K++ILDEAD+
Sbjct: 90 RSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLIILDEADA 149
Query: 418 MTDGAQQALRRTMELYSSTTRFALAANNSER 510
+ AQ ALRR ME +S TRF + N R
Sbjct: 150 LLPDAQAALRRMMEDFSDVTRFCILCNYVSR 180
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Frame = +2
Query: 44 PEKKQVKPSSSKSTN---LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG-NAPNIIIAG 211
P +K+ K + T PW+EKYRP+T ++ ++ V L K G N P+ + G
Sbjct: 7 PAQKRAKTEGASDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 212 PPGVGKTTTILCLA 253
PPG GKTT+IL +A
Sbjct: 67 PPGTGKTTSILAVA 80
Score = 42.7 bits (96), Expect = 0.009
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI II+PI SRCA R+ L + + ++ + E ++ + + A+ +
Sbjct: 171 FCILCNYVSRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSG 230
Query: 660 GDLRSALNNLQSTAQGFG 713
GDLR A+ +LQS + G
Sbjct: 231 GDLRLAIMHLQSAQKAKG 248
>UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1)
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT -
Encephalitozoon cuniculi
Length = 305
Score = 66.9 bits (156), Expect = 5e-10
Identities = 39/75 (52%), Positives = 49/75 (65%)
Frame = +1
Query: 277 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 456
+ +VLELNAS++RGI VR IK FA K+VILDEAD M+ AQ ALRR +
Sbjct: 62 RTSVLELNASDERGIATVRETIKEFASTYSKTM----KLVILDEADMMSRDAQNALRRII 117
Query: 457 ELYSSTTRFALAANN 501
E +S+ TRF L AN+
Sbjct: 118 EDFSANTRFCLIANH 132
Score = 65.3 bits (152), Expect = 2e-09
Identities = 30/85 (35%), Positives = 49/85 (57%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ + +II PI SRC R+ + D + ++ EIC +E++ YT EG+ AV +
Sbjct: 126 FCLIANHLRKIISPILSRCTKFRFGPIGDTE--NRIEEICKRESIKYTPEGIKAVSRISM 183
Query: 660 GDLRSALNNLQSTAQGFGHISPDNV 734
GD+R A+N++Q + G + NV
Sbjct: 184 GDMRKAVNDIQGISASLGQVDESNV 208
Score = 56.8 bits (131), Expect = 5e-07
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +2
Query: 101 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
EKYRP + ++VGN + VS L + G PN++ GPPG GKTT+I +A
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIA 57
>UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=2;
Cryptosporidium|Rep: Replication factor RFC3 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 383
Score = 62.5 bits (145), Expect = 1e-08
Identities = 22/60 (36%), Positives = 39/60 (65%)
Frame = +2
Query: 77 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+ LPW+EKYRP D++ ++D ++ + F +G P+++ GPPG GKT+TI +++
Sbjct: 8 EEAQLPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISK 67
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI +I +QSRC R+S L I ++ EI E + T EG +++ +++
Sbjct: 172 FCIICNYVNKITPALQSRCTRFRFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSR 231
Query: 660 GDLRSALNNLQS-TAQGFGHI 719
GD+R LN LQS + +G+I
Sbjct: 232 GDMRKVLNVLQSCSMSNYGNI 252
Score = 47.2 bits (107), Expect(2) = 1e-09
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
K++ILDEAD MT AQ ALRR ME YS RF + N
Sbjct: 141 KLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICN 177
Score = 38.7 bits (86), Expect(2) = 1e-09
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVT 369
VLELNAS+DRGI+VVR+ IK F++ T
Sbjct: 78 VLELNASDDRGINVVRDAIKSFSESAST 105
>UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1;
Aspergillus fumigatus|Rep: Replication factor C subunit
- Aspergillus fumigatus (Sartorya fumigata)
Length = 389
Score = 65.3 bits (152), Expect = 2e-09
Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Frame = +1
Query: 226 KNDDYTMLSAALLG-VSFKDAVLELNASNDRGIDVVRNKIKMFAQQ----KVTL---PPG 381
K L+ L G VLELNAS+DR + V+ +IK FA KV L P
Sbjct: 65 KTSTILALARQLYGDADMSQMVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLRESPYN 124
Query: 382 RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANN 501
K+VILDEAD+M AQ ALRR +E Y++ TRF + NN
Sbjct: 125 MFKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNN 164
Score = 62.5 bits (145), Expect = 1e-08
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Frame = +2
Query: 68 SSSKSTN--LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 241
SS+ T+ LPW +KYRP T +VG ++T+S L F P+++ GPPG GKT+TI
Sbjct: 10 SSTAETDDVLPWQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPHLLFHGPPGTGKTSTI 69
Query: 242 LCLAQ 256
L LA+
Sbjct: 70 LALAR 74
Score = 42.3 bits (95), Expect = 0.012
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 471 YNSFCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVF 650
+ FCI + +++ + SRCA LR+ L + I ++++ EN+ E + +
Sbjct: 155 FTRFCIITNNIHKLLPALISRCARLRFPPLRPSAIRTLLLQVATTENIQVRPEALEYLST 214
Query: 651 TAQGDLRSALNNLQ 692
T+ GD+R AL LQ
Sbjct: 215 TSHGDMRQALAVLQ 228
>UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replication
factor C subunit RFC5; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to replication factor
C subunit RFC5 - Strongylocentrotus purpuratus
Length = 292
Score = 64.1 bits (149), Expect = 3e-09
Identities = 34/59 (57%), Positives = 40/59 (67%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 450
F VLELNAS+DRGI +VR I FA + G K+VILDEAD+MT+ AQ ALRR
Sbjct: 64 FNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSG-FKLVILDEADAMTNDAQNALRR 121
Score = 57.2 bits (132), Expect = 4e-07
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +2
Query: 98 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+EKYRP + DD++ + + ++ + F K P+++ GPPG GKT+TIL +A+
Sbjct: 4 VEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAK 56
>UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_161256_160291 - Giardia
lamblia ATCC 50803
Length = 321
Score = 62.9 bits (146), Expect = 8e-09
Identities = 42/99 (42%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Frame = +1
Query: 241 TMLSAALLGVSFKDAV----LELNASNDRGIDVVRNKIKMFAQQKVTLPPG-----RHKI 393
T L AL+ F DAV LELNAS+D G+DV+R +K F L + KI
Sbjct: 49 TTLIKALMNELFGDAVSTHVLELNASDDSGVDVIRQTVKGFVTSGSVLSQQSSSATKFKI 108
Query: 394 VILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
VI+DE D M+ AQ +LRR ME RF L N E+
Sbjct: 109 VIMDECDHMSSVAQASLRRLMETSIKHARFCLLCNYPEK 147
Score = 55.6 bits (128), Expect = 1e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
+PW+EKYRP T + +V +E ++ + + G P++I G PG GKTT I L
Sbjct: 2 IPWVEKYRPSTTEGVVSHELIIAAIRALIREGRLPHMIFYGKPGTGKTTLIKAL 55
Score = 36.3 bits (80), Expect = 0.80
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ +++ I SRC R+ + L + +I + E + ++A+
Sbjct: 138 FCLLCNYPEKLLPAILSRCCAFRFLPVPRESCLLMLEKIADAEGMQMAPGALAAIHAVTD 197
Query: 660 GDLRSALNNLQS 695
GDLR A+N LQS
Sbjct: 198 GDLRQAINVLQS 209
>UniRef50_A3CUW4 Cluster: Replication factor C; n=2;
Methanomicrobiales|Rep: Replication factor C -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 336
Score = 62.9 bits (146), Expect = 8e-09
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
W E YRP+ DDI+G ++ V L F+ +G+ P+++I+GP G GKT + CLA+
Sbjct: 3 WSEVYRPRRCDDIIGQDEVVRHLTAFSDSGSVPHMLISGPHGTGKTAAVECLAK 56
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
II I SRC L ++ + + +L ++ EI E + + + +V+ AQGDLR A+ L
Sbjct: 162 IIPAIASRCLPLFFAPVESSLVLTRLEEILAAEGAAVPADDIDLIVYAAQGDLRRAIMYL 221
Query: 690 QSTAQ 704
Q A+
Sbjct: 222 QIAAR 226
Score = 41.1 bits (92), Expect = 0.028
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRF 483
K+++ ++A +T AQQALRRTME YS+T RF
Sbjct: 121 KLMVFEDAHGLTFEAQQALRRTMERYSATCRF 152
>UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_61_35037_36092 - Giardia lamblia
ATCC 50803
Length = 351
Score = 62.5 bits (145), Expect = 1e-08
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 9/80 (11%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK---------IVILDEADSMTDGAQQ 438
V E NAS DRGI +VR +IK A+ + + P K ++ILDEAD++T +Q
Sbjct: 70 VSEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEADALTRESQA 129
Query: 439 ALRRTMELYSSTTRFALAAN 498
ALRR +E +S TTRF + N
Sbjct: 130 ALRRIIEDFSETTRFCIICN 149
Score = 46.8 bits (106), Expect = 6e-04
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 241
PW EK+RP D I+ + V ++GN P++++ GP G GKTT I
Sbjct: 4 PWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLI 53
Score = 41.1 bits (92), Expect = 0.028
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEIC----------NKENLSYTEE 629
FCI +II PI SRCA +S L I+ ++ IC N++ S E
Sbjct: 144 FCIICNYPSQIIAPIVSRCARFAFSSLPRPLIIDRLESICYAEMHQLRNANEKLSSSASE 203
Query: 630 GVSAVVFTAQGDLRSALNNLQSTAQ 704
+ V +QGD+R+A+ LQ+T Q
Sbjct: 204 ALGEVATLSQGDMRAAITLLQATVQ 228
>UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1;
Guillardia theta|Rep: Replication factor C 37 KD subunit
- Guillardia theta (Cryptomonas phi)
Length = 290
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
+L+LNAS + I ++RNKIK+F + + + K+V++DEAD ++ +Q+ALRR +E +
Sbjct: 55 ILKLNASQNNSISIIRNKIKIFCRSSIQSK--KLKVVVIDEADLLSVISQEALRRIIEKF 112
Query: 466 SSTTRFALAANNSER 510
S ++RF L N R
Sbjct: 113 SLSSRFILICNYPTR 127
>UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36
kDa SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT -
Encephalitozoon cuniculi
Length = 283
Score = 61.3 bits (142), Expect = 2e-08
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Frame = +1
Query: 289 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 468
LELNAS++RGI V+R KIK++A TL G+ K VILDE +++T AQ LRR +E S
Sbjct: 58 LELNASDERGISVIREKIKVYAS---TL--GKDKTVILDECENLTSDAQHCLRRVIE-DS 111
Query: 469 STTRFALAANNSER**NPYN---LGVLYSGTPGLVMHRY*QRL*RSAIKKTYHTLKKV 633
TRF N + P + V ++ T ++ + K+ YH + K+
Sbjct: 112 VNTRFIFITNYPSKIIGPLRSRLVSVKFTPTESKILENIGSKEGLGYDKELYHRILKL 169
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSSE 268
W EKYRP++ D G E + L + G+ PN+++ GPPG GKTT LA E
Sbjct: 3 WTEKYRPKSTDAFEGPEHLKNILRNSSGRGH-PNLLLYGPPGTGKTTFAHLLASQKLE 59
>UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44 -
Bacteriophage KVP40
Length = 318
Score = 60.9 bits (141), Expect = 3e-08
Identities = 37/90 (41%), Positives = 54/90 (60%)
Frame = +1
Query: 241 TMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 420
T+ A L + ++ VL +NAS+ RGI +V+N + F V+ G K VILDEAD++
Sbjct: 59 TVARAVLADMGYE--VLFVNASSSRGIGLVQNDLPAFCST-VSFS-GNPKAVILDEADNL 114
Query: 421 TDGAQQALRRTMELYSSTTRFALAANNSER 510
T AQ+ALR +E YS RF L N +++
Sbjct: 115 TPDAQKALRGLIEQYSKNVRFVLTCNYAQK 144
Score = 36.7 bits (81), Expect = 0.61
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 74 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIII-AGPPGVGKTTTI-LC 247
S + L W +KYRPQ+ D V E PN+++ + PG GKTT
Sbjct: 5 SVANELLWEQKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTVARAV 64
Query: 248 LAQLSSEYL 274
LA + E L
Sbjct: 65 LADMGYEVL 73
>UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4;
Thermococcaceae|Rep: Replication factor C large subunit
- Pyrococcus abyssi
Length = 479
Score = 60.5 bits (140), Expect = 4e-08
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTILCL 250
+PW+EKYRP+ +I+ ED +S++ + + GN P +++AGPPG GKTTT+ L
Sbjct: 4 VPWVEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYAL 63
Query: 251 AQ 256
A+
Sbjct: 64 AR 65
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/67 (28%), Positives = 39/67 (58%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
E+ + I+ R ++ Y RL+ ++ ++ I +E ++ +E + + A GDLR+A+N+
Sbjct: 141 EVPKEIRDRAELVEYKRLTQRDVINALVRILKREGITVPKEVLVEIAKRASGDLRAAIND 200
Query: 687 LQSTAQG 707
LQ+ G
Sbjct: 201 LQTVVAG 207
>UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1;
Methanospirillum hungatei JF-1|Rep: Replication factor C
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 331
Score = 58.8 bits (136), Expect = 1e-07
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 241
WIEKYRP TFD I+G E L A T N P+++++GPPG GK+ +
Sbjct: 3 WIEKYRPVTFDQILGQERVCEVLRRCAATKNLPHLVVSGPPGTGKSAAV 51
Score = 37.1 bits (82), Expect = 0.46
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRF 483
K+++ ++A +++ Q ALRRTME YS+T RF
Sbjct: 121 KVMLFEDAHALSHDIQHALRRTMERYSNTCRF 152
>UniRef50_O29072 Cluster: Replication factor C large subunit; n=1;
Archaeoglobus fulgidus|Rep: Replication factor C large
subunit - Archaeoglobus fulgidus
Length = 479
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/56 (44%), Positives = 42/56 (75%), Gaps = 3/56 (5%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPNIIIAGPPGVGKTTTILCLA 253
W+EKYRP+T +++V ++ ++R+ +AK+ G+ P +++AGPPGVGKT+ L LA
Sbjct: 3 WVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKP-LLLAGPPGVGKTSLALALA 57
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIE-ICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQST 698
+++ C ++ + RL+ Q+ A+V+E I KE + + + + A GDLR+A+N+ Q+
Sbjct: 154 LRNLCEMINFKRLTKQQV-ARVLERIALKEGIKVDKSVLLKIAENAGGDLRAAINDFQAL 212
Query: 699 AQGFGHISPDNVF 737
A+G + P++VF
Sbjct: 213 AEGKEELKPEDVF 225
>UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-224 - Ectocarpus siliculosus virus 1
Length = 324
Score = 56.0 bits (129), Expect = 9e-07
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
W EK+RP D+ GN+ + L F PN+I+ GPPG GKT++I+ +A+
Sbjct: 4 WTEKHRPTRLQDVSGNDHVIRALQSFTSMETTPNMILHGPPGSGKTSSIISMAK 57
Score = 53.6 bits (123), Expect = 5e-06
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 289 LELNASNDRGIDVVRNKIKMFAQ-QKVT-LPPGRHKIVILDEADSMTDGAQQALRRTMEL 462
LELNA + R I +R++I F + VT K+VILDEAD +T AQ+ALR +E
Sbjct: 70 LELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRHLIET 129
Query: 463 YSSTTRFALAANNSER 510
S RF L N R
Sbjct: 130 TSGRARFCLCCNYISR 145
Score = 50.4 bits (115), Expect = 5e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ + ++SRC +S + + Q+ + E+ KE+L +EEG++AVV
Sbjct: 136 FCLCCNYISRLSSGLRSRCTSFSFSGIGNVQLAHTLREVARKEDLEISEEGLNAVVKVCA 195
Query: 660 GDLRSALNNLQSTAQG 707
GD R +N LQS + G
Sbjct: 196 GDARQGINLLQSLSLG 211
>UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Methanocorpusculum labreanum Z|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 332
Score = 55.6 bits (128), Expect = 1e-06
Identities = 19/49 (38%), Positives = 34/49 (69%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 241
WIEKYRP +F++++G V +L+ +A GN P++++ G G GK++ +
Sbjct: 3 WIEKYRPTSFEEVIGQNSPVKQLSAYAALGNLPHLLVIGRSGCGKSSAL 51
Score = 35.5 bits (78), Expect = 1.4
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENL--SYTEEGVSAVVFTAQGDLRSAL 680
II+PI+SRC L + + +A + + + +E S +EE + ++ + GDLR AL
Sbjct: 162 IIDPIRSRCVPLYFLPIDEATMRDYLKHVLEQEGCVGSISEENLDMLILGSAGDLRKAL 220
>UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida
albicans unknown function; n=1; Yarrowia lipolytica|Rep:
Similar to ca|CA5054|IPF3704 Candida albicans unknown
function - Yarrowia lipolytica (Candida lipolytica)
Length = 626
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/71 (43%), Positives = 39/71 (54%)
Frame = +2
Query: 50 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 229
K ++ T LP E RPQT DDI G ++ ++ L F G P+II GPPGVGK
Sbjct: 112 KSAATKEPARHTPLP--ELCRPQTLDDISGQKELMAVLRRFVAYGRIPSIIFWGPPGVGK 169
Query: 230 TTTILCLAQLS 262
TT LA+ S
Sbjct: 170 TTLARILAKTS 180
>UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1;
uncultured archaeon GZfos31B6|Rep: Replication factor C
subunit - uncultured archaeon GZfos31B6
Length = 416
Score = 55.2 bits (127), Expect = 2e-06
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
W EKYRP TF+DIVG+E V+ L ++ N P++++ G GK + + LA+
Sbjct: 77 WTEKYRPHTFEDIVGHEHIVANLKHLVESNNLPHLVLYGAKNTGKMSAVFVLAR 130
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/78 (33%), Positives = 42/78 (53%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
+I ++SR L + R SDA + A + I E T++GV A+V+ A GDL A+ L
Sbjct: 242 LIPALRSRGLNLFFDRASDATVAAHIRCIAEAERAPITDDGVQAIVYEADGDLAFAIMVL 301
Query: 690 QSTAQGFGHISPDNVFKV 743
Q + I+ + V++V
Sbjct: 302 QIASMKRREITANTVYEV 319
>UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2;
Desulfurococcales|Rep: Replication factor C large
subunit - Hyperthermus butylicus (strain DSM 5456 / JCM
9403)
Length = 484
Score = 55.2 bits (127), Expect = 2e-06
Identities = 24/74 (32%), Positives = 46/74 (62%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
++P++ ++ + RLS+ ++ + IC EN+ +E + + A+GDLRSA+N+LQ
Sbjct: 150 LKPLRDASLMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQ 209
Query: 693 STAQGFGHISPDNV 734
+ A+G+G + D V
Sbjct: 210 AIAEGYGVVRVDLV 223
Score = 39.5 bits (88), Expect = 0.086
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTI 241
S LPWI KYRP+ +D+V E+ + ++ G P + GP GVGKT+ +
Sbjct: 2 SDKLPWIIKYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERKAALFYGPAGVGKTSLV 61
>UniRef50_A2E9V5 Cluster: Differentiation specific element binding
protein, putative; n=1; Trichomonas vaginalis G3|Rep:
Differentiation specific element binding protein,
putative - Trichomonas vaginalis G3
Length = 694
Score = 54.4 bits (125), Expect = 3e-06
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Frame = +2
Query: 74 SKSTNLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTI 241
S +TNL EKYRPQ +D++GN+D + + L F+K ++I+GPPG+GKT+T
Sbjct: 216 SSATNLI-SEKYRPQNRNDLIGNKDLIEKIDNWLITFSKQDKKA-VLISGPPGIGKTSTA 273
Query: 242 LCLAQ 256
L LA+
Sbjct: 274 LLLAK 278
Score = 40.3 bits (90), Expect = 0.049
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI + E ++PI +++S +++ +V EI +E + + + A + +
Sbjct: 357 FCICNDRQSEKLKPILKYVLDIQFSAPDKKEMIQRVFEISKQEGIKIDRKNLFAAIDKSG 416
Query: 660 GDLRSALNNLQSTAQGFGH 716
GD+RSALN LQ + G+
Sbjct: 417 GDMRSALNALQLWSSNCGN 435
>UniRef50_Q4P896 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 566
Score = 54.4 bits (125), Expect = 3e-06
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSS 265
P+ E+ RPQT D+ VG D V+ L + + G P++I+ GPPG GKTT LA+ +S
Sbjct: 27 PFAERMRPQTLDEYVGQSDVVNGPLKMLLRQGKIPSMILWGPPGTGKTTLARLLAKSAS 85
>UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1;
Thermofilum pendens Hrk 5|Rep: Replication factor C
large subunit - Thermofilum pendens (strain Hrk 5)
Length = 413
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/70 (34%), Positives = 43/70 (61%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+ P++ C ++ + ++ I+ + IC+KE + + E +SA+ A+GDLR+A+N+LQ
Sbjct: 153 LRPLRDLCELIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIADNAKGDLRAAINDLQ 212
Query: 693 STAQGFGHIS 722
S A G IS
Sbjct: 213 SLAMGKKTIS 222
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +2
Query: 68 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPN---IIIAGPPGVGKT 232
S+ K +PW EKYRP D+VGNE+ + + + P+ ++ GPPG GKT
Sbjct: 2 SAVKVQLVPWTEKYRPARIADVVGNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKT 61
Query: 233 TTILCLAQ 256
+ + A+
Sbjct: 62 SIVHATAK 69
>UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C large
subunit - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 492
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPN-IIIAGPPGVGKTTTILCLAQLS 262
W +KYRP+T D++VGN + + + K GN +++ GPPG+GKTT +A+
Sbjct: 3 WTDKYRPKTLDEVVGNNKEKALIQKWVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAREF 62
Query: 263 SEYL 274
SEY+
Sbjct: 63 SEYI 66
Score = 33.5 bits (73), Expect = 5.6
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
I ++++C VL+ S++ I + +I E + + + + GD+RSA+N Q
Sbjct: 143 IASLKTKCDVLKMSKVRSPSINKLLKQIAINEGIKANPAALKELAKKSNGDMRSAINTFQ 202
Query: 693 STA 701
+ A
Sbjct: 203 ALA 205
>UniRef50_A7AMJ0 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 944
Score = 53.6 bits (123), Expect = 5e-06
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Frame = +2
Query: 68 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN-IIIAGPPGVGKTT 235
+S+ +T+LP EKYRP D++GNE + ++ + K+ G+ P +++GPPGVGKTT
Sbjct: 424 TSTDNTSLPLCEKYRPIHLTDLIGNEANIRKVVDWLKSWSPGSLPACALLSGPPGVGKTT 483
Query: 236 TILCLA 253
T +A
Sbjct: 484 TAKIVA 489
>UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 346
Score = 53.6 bits (123), Expect = 5e-06
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEP++SRC V+R R+ A I V E+ +KEN ++E ++ +V + G+LR A+N
Sbjct: 167 QIIEPVRSRCLVIRTPRIPSADIATAVKEVASKENFEISDEQLTDLVNESIGNLRRAINL 226
Query: 687 LQ 692
L+
Sbjct: 227 LE 228
Score = 41.1 bits (92), Expect = 0.028
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 244
WI+++RP DD+ + L + + + P+++ GPPG GK T +L
Sbjct: 5 WIDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVL 54
Score = 41.1 bits (92), Expect = 0.028
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER**NPYNLGVLYSGTP 555
K+V+++EA ++ AQQALRRTME Y+ + R L A++ + P L TP
Sbjct: 127 KVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLVIRTP 182
>UniRef50_P42425 Cluster: ATP-dependent protease La homolog; n=46;
Firmicutes|Rep: ATP-dependent protease La homolog -
Bacillus subtilis
Length = 552
Score = 53.6 bits (123), Expect = 5e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +2
Query: 47 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVG 226
E +Q++ + S + P EK RP++F DIVG ED + L N ++I+ GPPGVG
Sbjct: 43 EMEQLRKMRAISLSEPLSEKVRPKSFKDIVGQEDGIKALKAALCGPNPQHVIVYGPPGVG 102
Query: 227 KT 232
KT
Sbjct: 103 KT 104
>UniRef50_Q6MPI4 Cluster: ATPase, AAA family; n=1; Bdellovibrio
bacteriovorus|Rep: ATPase, AAA family - Bdellovibrio
bacteriovorus
Length = 449
Score = 52.0 bits (119), Expect = 2e-05
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
P E RP+T DDI G + T+ S+L + G P++II GPPG GKTT L L+Q
Sbjct: 27 PLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKGYLPSLIIWGPPGTGKTTFALALSQ 84
>UniRef50_Q17P00 Cluster: Werner helicase interacting protein; n=2;
Endopterygota|Rep: Werner helicase interacting protein -
Aedes aegypti (Yellowfever mosquito)
Length = 560
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 44 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGP 214
P+K + K + +N+P EK RP D +G E + + L + P++I+ GP
Sbjct: 121 PDKNKAKVGDEEGSNIPLAEKMRPDELSDYIGQEQIIGKNTVLRTLFEKNTIPSMILWGP 180
Query: 215 PGVGKTT 235
PG GKTT
Sbjct: 181 PGCGKTT 187
>UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6;
Methanococcales|Rep: Replication factor C large subunit
- Methanococcus jannaschii
Length = 516
Score = 51.6 bits (118), Expect = 2e-05
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN-IIIAGPPGVGKTTTILCLA 253
L W+EKYRP++ D+ G+E +L + ++ G P I++ GPPG GKTT LA
Sbjct: 2 LSWVEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPKPILLVGPPGCGKTTLAYALA 60
>UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 389
Score = 51.2 bits (117), Expect = 3e-05
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 229
PW+EKYRPQ+ D+ + D V + P++++ GPPG GK
Sbjct: 39 PWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGK 84
Score = 49.2 bits (112), Expect = 1e-04
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 12/77 (15%)
Frame = +1
Query: 307 NDRGIDVVRNKIKMFAQQKVTLPPGRH--KIVILDEADSMTDGAQQALRR---------- 450
N+RGIDVVR +I+ FA + + K+V+LDEAD+MT AQ ALRR
Sbjct: 99 NERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLT 158
Query: 451 TMELYSSTTRFALAANN 501
+E ++ +TRFAL N+
Sbjct: 159 VIEKHTRSTRFALICNH 175
Score = 46.8 bits (106), Expect = 6e-04
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II +QSRC R++ L + ++ I E L + G++A+V + GD+R ALN
Sbjct: 268 KIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNI 327
Query: 687 LQS 695
LQS
Sbjct: 328 LQS 330
Score = 35.5 bits (78), Expect = 1.4
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 10/48 (20%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRR----------TMELYSSTTRFALAANN 501
K+V+LDEAD+MT AQ ALRR +E ++ +TRFAL N+
Sbjct: 218 KMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNH 265
>UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1;
Methanosaeta thermophila PT|Rep: Replication factor C
large subunit - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 467
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPNI---IIAGPPGVGKTTTILCLA-Q 256
W EKYRP+ D I+GN VS L +A P + I+ GPPGVGKT+ L LA +
Sbjct: 4 WAEKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALASE 63
Query: 257 LSSEYL 274
+ +Y+
Sbjct: 64 MDWDYI 69
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/75 (29%), Positives = 42/75 (56%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
I +P++ C +++ + I + + EIC E + E V + + GDLRSA+N+L
Sbjct: 143 IEKPLRDACRGVQFRSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGDLRSAINDL 202
Query: 690 QSTAQGFGHISPDNV 734
++ A+G H+ ++V
Sbjct: 203 EAAARGLKHLRLEDV 217
Score = 34.7 bits (76), Expect = 2.4
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +1
Query: 250 SAALLGVSFKD-AVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 420
SAAL S D +ELNAS+ R +++++ I A Q T GR ++VILDEAD++
Sbjct: 55 SAALALASEMDWDYIELNASDQRTAEIIKS-IAGPASQVSTFS-GRRRLVILDEADNL 110
>UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22;
Alphaproteobacteria|Rep: DNA polymerase III tau subunit
- Bradyrhizobium japonicum
Length = 613
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = +2
Query: 68 SSSKSTNLPW---IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTT 235
S+S++ N P+ KYRP +FDD++G E V ++ +TG P I+ G GVGKTT
Sbjct: 12 SASQAGNAPYRVLARKYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTT 71
Query: 236 TILCLAQ 256
T LA+
Sbjct: 72 TARILAR 78
>UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Rep:
Sliding clamp loader gp44 - Cyanophage phage S-PM2
Length = 315
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 295 LNASND-RGIDVVRNKIKMFAQQKVTLPPGR-HKIVILDEADSMTDGAQQALRRTMELYS 468
+N S++ R +D VRN+++ FA V+L G HK+VI+DEAD+ T Q +LR +E +
Sbjct: 70 INGSDEGRFLDTVRNRVRQFATT-VSLTSGAPHKVVIIDEADNTTHDVQLSLRTAVEEFH 128
Query: 469 STTRFALAAN 498
RF N
Sbjct: 129 GNCRFIFTCN 138
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA-QLSSEY 271
W+E+YRP++ DD + + F + G PN+++ G GVGKTT + Q+ + Y
Sbjct: 8 WVEQYRPKSVDDCILPTSIKNSFKAFVEQGEIPNLLLTGSAGVGKTTIAKAVCEQIGASY 67
Query: 272 L 274
+
Sbjct: 68 I 68
>UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: DNA REPLICATION
FACTOR C 38kDa SUBUNIT - Encephalitozoon cuniculi
Length = 354
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
WIEKYRP++FD+++G E+ L + P++I+ G G GK T +LCL
Sbjct: 3 WIEKYRPRSFDEMIGREEASGLLKSYT-LETIPHMIVHGRSGHGKKTVLLCL 53
Score = 43.2 bits (97), Expect = 0.007
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSAL 680
+IEPI+SRC LR SD + + + I KEN + +E + + + GD+R AL
Sbjct: 171 LIEPIRSRCFFLRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRAL 227
Score = 41.1 bits (92), Expect = 0.028
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER**NPYNLGVLYSGTPGLVM 567
K+V++ A+ +T AQ ALRRT+E+YS R L N R P + PG
Sbjct: 130 KLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCFFLRIPGFSD 189
Query: 568 HRY*QRL*RSAIKKTYHTLKKV*VQ 642
+ R K+ Y K+ V+
Sbjct: 190 EDVTSNMCRILEKENYTVPKETLVE 214
>UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep: Replication
factor C large subunit - Uncultured methanogenic
archaeon RC-I
Length = 553
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT-GNAPN-IIIAGPPGVGKTTTILCLA 253
W EKYRP + DIVGN+ V L +A+T G +I+ G PGVGKT+ L LA
Sbjct: 10 WTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALA 64
Score = 37.5 bits (83), Expect = 0.35
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +3
Query: 516 EPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQS 695
+P++ +++ + + + ++C E L E + + DLRSA+N+LQ+
Sbjct: 150 KPLRESALQIQFRAILSTSVAKVLRKVCANEGLKCDPEALMKIA-ERTNDLRSAINDLQA 208
Query: 696 TAQGFGHISPDNV 734
AQG G ++ +V
Sbjct: 209 AAQGSGQVTVADV 221
>UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64;
Eukaryota|Rep: Replication factor C subunit 3 - Homo
sapiens (Human)
Length = 356
Score = 50.8 bits (116), Expect = 3e-05
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +1
Query: 289 LELNASNDRGID--VVRNKIKMFAQ--QKVTLPPGRHKIVILDEADSMTDGAQQALRRTM 456
LE+N S+ D V++ +K AQ Q T K+V+L E D +T AQ ALRRTM
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 457 ELYSSTTRFALAANNSER 510
E Y ST R L N++ +
Sbjct: 153 EKYMSTCRLILCCNSTSK 170
Score = 45.6 bits (103), Expect = 0.001
Identities = 16/52 (30%), Positives = 33/52 (63%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
W++KYRP + + +++ ++L + G+ P++++ GP G GK T I+C+
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCI 55
>UniRef50_Q2TVY2 Cluster: Checkpoint RAD17-RFC complex; n=2;
Aspergillus|Rep: Checkpoint RAD17-RFC complex -
Aspergillus oryzae
Length = 843
Score = 50.4 bits (115), Expect = 5e-05
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +2
Query: 47 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLA-----VFAKTGNAPNIIIAG 211
E P S++ LPW ++Y P D++V ++ VS + FA TG +++ G
Sbjct: 195 ENNDSSPIHSQAHKLPWAQQYSPTNLDELVVHKRKVSDVQSWLRNAFAGTGEHKLLVLRG 254
Query: 212 PPGVGKTTTILCLAQ 256
P G GKTTTI L+Q
Sbjct: 255 PAGSGKTTTINILSQ 269
>UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C subunit -
Methanosarcina acetivorans
Length = 344
Score = 50.0 bits (114), Expect = 6e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
W KYR +T + ++GNE V L+ ++G P++I GP GKTT L LA+
Sbjct: 8 WTLKYRAETLEGMLGNEHAVRTLSELLQSGTLPHLIFYGPENSGKTTASLALAR 61
Score = 46.4 bits (105), Expect = 7e-04
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +1
Query: 385 HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER**NPY---NLGVLYSGTP 555
+KI+ +D A+S++ AQ ALRR ME YSST RF L+ + +P L V ++ P
Sbjct: 131 YKIIYIDNAESLSSDAQHALRRIMEKYSSTCRFILSTTRPSKLISPLRSRGLQVFFAYVP 190
Query: 556 GLVMHRY*QRL 588
++ + +R+
Sbjct: 191 DSLLKTHLERI 201
>UniRef50_UPI00015BB275 Cluster: replication factor C large subunit;
n=1; Ignicoccus hospitalis KIN4/I|Rep: replication
factor C large subunit - Ignicoccus hospitalis KIN4/I
Length = 476
Score = 49.6 bits (113), Expect = 8e-05
Identities = 20/72 (27%), Positives = 43/72 (59%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+ PI+ ++ + R+ + +++IC KE + +E V ++ +GDLR+++N+LQ
Sbjct: 149 LRPIREESLLVEFKRIPKTKAREFLLKICEKEGVYCEKEAVDYIIEKNKGDLRASINDLQ 208
Query: 693 STAQGFGHISPD 728
S A+ +G ++ D
Sbjct: 209 SIAEAYGKVTLD 220
Score = 41.5 bits (93), Expect = 0.021
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN---IIIAGPPGVGKTTTI 241
+PWI KYRP+ +D++ E L + K +G P ++ GPPGVGKT+ +
Sbjct: 4 VPWIIKYRPKRVEDVIDQEKAKEVLIPWIKKWLSGTPPEKRAALLWGPPGVGKTSLV 60
Score = 34.3 bits (75), Expect = 3.2
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +1
Query: 289 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD-GAQQALRRTMELY 465
+E+NAS+ R + ++ + A K LPP + ++++LDE D ++ G + A+ +EL
Sbjct: 72 IEMNASDFRRKGDIE-RVAIAAATKKPLPPWKGRLILLDEVDGLSPRGDEGAVAAILELI 130
Query: 466 SSTTR-FALAANN 501
T + AN+
Sbjct: 131 KKTKNPIVMTAND 143
>UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Thermosipho melanesiensis BI429|Rep: DNA
polymerase III, subunits gamma and tau - Thermosipho
melanesiensis BI429
Length = 460
Score = 49.6 bits (113), Expect = 8e-05
Identities = 32/80 (40%), Positives = 47/80 (58%)
Frame = +1
Query: 271 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 450
+F D VLEL+A+++RGID +R KI+ G++K+ I+DEA +T A AL +
Sbjct: 84 NFMD-VLELDAASNRGIDEIR-KIRETVNYHTA--QGKYKVYIIDEAHMLTKEAFNALLK 139
Query: 451 TMELYSSTTRFALAANNSER 510
T+E S F LA N E+
Sbjct: 140 TLEEPPSNVVFILATTNPEK 159
Score = 39.9 bits (89), Expect = 0.065
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+I + I SRC V+ + +S+ I+ ++ +C E + + E + + A G LR AL
Sbjct: 159 KIPQTIISRCQVIDFKNISNKDIIKRLEFVCENEGIKISHEAIVEISKRANGGLRDALTI 218
Query: 687 LQSTAQGFG 713
L+ G
Sbjct: 219 LEQVINSAG 227
>UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1;
Methanocorpusculum labreanum Z|Rep: Replication factor C
large subunit - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 476
Score = 49.6 bits (113), Expect = 8e-05
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLAQ 256
+ W EKYRP DI+GN V ++ +AKT + ++ G PG+GKT+ L LA+
Sbjct: 1 MDWAEKYRPMHLADILGNGSAVRQIVDWAKTWTPDSRPLLFTGKPGIGKTSAALALAR 58
Score = 37.9 bits (84), Expect = 0.26
Identities = 18/75 (24%), Positives = 43/75 (57%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
+ + I+ C + + + + + ++ EIC E+++ E+ +SA+ ++ GD+R+A+N L
Sbjct: 140 VSDSIRRLCDPVPFRAIGVSTLQKRMKEICRFEDIACGEDALSAIAESSAGDMRTAVNML 199
Query: 690 QSTAQGFGHISPDNV 734
++ G IS ++
Sbjct: 200 FGSSTGKTSISVGDI 214
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 507 EIIEP-IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN 683
E I P I SRC VL + +S+ I++K+ +C KE T E + + A+G LR AL+
Sbjct: 158 EKIPPTIMSRCHVLEFRNISEENIISKLKSVCEKEGFDVTYEALKKIAKRAEGGLRDALS 217
Query: 684 NLQSTAQGFG 713
L+ + G
Sbjct: 218 TLEQVIRYTG 227
Score = 44.8 bits (101), Expect = 0.002
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTME 459
V+EL+A+++RGID +R KIK + V P G++K+ I+DE +T A AL +T+E
Sbjct: 88 VIELDAASNRGIDEIR-KIK----EGVNFTPVMGKYKVYIIDEVHMLTREAFNALLKTLE 142
Query: 460 LYSSTTRFALAANNSER 510
F LA N E+
Sbjct: 143 EPPQHIVFILATTNPEK 159
Score = 39.9 bits (89), Expect = 0.065
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLAQ 256
KYRP+ F DIVG E L K + I AGP G GKTTT LA+
Sbjct: 7 KYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAK 58
>UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2;
Methanomicrobiales|Rep: Replication factor C large
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 483
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPNIIIAGPPGVGKTTTILCLA 253
+ W EKYRP+ +++VGN + + +++ +A T +P +I+ G PG+GKT++ LA
Sbjct: 1 MDWAEKYRPRHLNEMVGNREALHQMSEWATRWTVESPPLILYGKPGIGKTSSAWALA 57
Score = 40.7 bits (91), Expect = 0.037
Identities = 18/71 (25%), Positives = 42/71 (59%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA 701
I++ C +++ L ++ ++ EIC++E L+ + + ++ + + GD+RSA+ L ++A
Sbjct: 144 IRNLCTKVQFKALPAKSLVPRLREICSREQLTCSAQALTDIAEQSGGDIRSAVTMLYASA 203
Query: 702 QGFGHISPDNV 734
G + D+V
Sbjct: 204 IGKDTVGEDDV 214
>UniRef50_P49956 Cluster: Chromosome transmission fidelity protein
18; n=3; Saccharomycetales|Rep: Chromosome transmission
fidelity protein 18 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 741
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/63 (33%), Positives = 40/63 (63%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+E ++ C ++ R SD +L ++ IC+KEN++ + ++ ++ AQGD+R+ +NNLQ
Sbjct: 305 LEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLIDLAQGDVRNCINNLQ 364
Query: 693 STA 701
A
Sbjct: 365 FLA 367
Score = 34.7 bits (76), Expect = 2.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRL 163
W+EK+RP+ F D+VGNE T R+
Sbjct: 116 WVEKWRPKKFLDLVGNEKTNRRM 138
>UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1;
Methanopyrus kandleri|Rep: Replication factor C large
subunit - Methanopyrus kandleri
Length = 510
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN---IIIAGPPGVGKTTTILCL 250
+PW+EKYRP++ ++V ++ LA +A G+ P +++ GPPG GKT+ L
Sbjct: 2 VPWVEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYAL 61
Query: 251 A 253
A
Sbjct: 62 A 62
Score = 46.4 bits (105), Expect = 7e-04
Identities = 20/65 (30%), Positives = 39/65 (60%)
Frame = +3
Query: 540 VLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHI 719
++ + RL I+ + IC +E + Y E + + A+GDLR+A+N+L++ A+ G +
Sbjct: 170 MIEFRRLRVNDIVEALRRICEREGIEYEEVALRRIAKRARGDLRAAINDLEALARPTGRV 229
Query: 720 SPDNV 734
+ D+V
Sbjct: 230 TSDDV 234
>UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1;
Aeropyrum pernix|Rep: Replication factor C large subunit
- Aeropyrum pernix
Length = 479
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/72 (27%), Positives = 42/72 (58%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+ + P++ ++ + L+ I+A + IC E + E + + ++GDLRSA+N+
Sbjct: 152 DFLRPLREVSLMVEFRPLTLTHIVAVLQRICEAERIECEREALRYIAERSEGDLRSAIND 211
Query: 687 LQSTAQGFGHIS 722
LQ+ A+G+G ++
Sbjct: 212 LQAVAEGYGRVT 223
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Frame = +2
Query: 65 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVG 226
P ++S+ +PW+ KYRP+ +D+V + L + K G P+ ++ GPPGVG
Sbjct: 2 PIVARSSRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVG 61
Query: 227 KTTTILCLA 253
KT+ + +A
Sbjct: 62 KTSLVEAIA 70
>UniRef50_Q97FT8 Cluster: Lon-like ATP-dependent protease; n=1;
Clostridium acetobutylicum|Rep: Lon-like ATP-dependent
protease - Clostridium acetobutylicum
Length = 566
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSS 265
++P E+ RP++FD+I+G ++ + L N ++II GPPGVGKT A+L+
Sbjct: 54 SIPLCEESRPKSFDEIIGQKNGIKTLKASICGPNPQHVIIYGPPGVGKTAA----ARLAL 109
Query: 266 EY 271
EY
Sbjct: 110 EY 111
>UniRef50_Q1QXX6 Cluster: AAA ATPase, central region; n=1;
Chromohalobacter salexigens DSM 3043|Rep: AAA ATPase,
central region - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 469
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +2
Query: 68 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTT 238
+SS+ N P + RP+ DD VG E V L A++G ++I+ GPPGVGKTT
Sbjct: 30 ASSQPDNTPLAYRMRPRRLDDYVGQEALVGPGKPLRRMAESGAVRSMILWGPPGVGKTTL 89
Query: 239 ILCLAQLSSEYLSK 280
LA S L +
Sbjct: 90 ADILADASGAMLER 103
>UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837,
putative; n=6; Plasmodium|Rep: Drosophila melanogaster
BcDNA.LD06837, putative - Plasmodium yoelii yoelii
Length = 363
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
W+EKY P++ D++ ++D +RL + + P+II G PG GK+T I CL
Sbjct: 16 WLEKYAPRSLDELNIHKDITTRLKKLSVHNDLPHIIFYGSPGGGKSTRIDCL 67
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENL--SYTEEGVSAVVFTAQG-DLRSA 677
+IIEP++SRC +R ++ +I + IC+ EN+ SY + G +LR
Sbjct: 181 KIIEPLKSRCICIRVPLPTEEEIFTVLKNICDNENVSSSYNSTNFFKTLINIHGRNLRKC 240
Query: 678 LNNLQST 698
+ L+ T
Sbjct: 241 IMALEMT 247
>UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1;
Caldivirga maquilingensis IC-167|Rep: AAA ATPase,
central region - Caldivirga maquilingensis IC-167
Length = 418
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN-IIIAGPPGVGKTTTILCLA 253
LPW EKYRP++ DIV E+ + + +G I+++GPPG GKTT + LA
Sbjct: 6 LPWFEKYRPRSLKDIVNQEEVKKTMEDWISKWLSGKEKRAILLSGPPGTGKTTMVHALA 64
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/64 (29%), Positives = 38/64 (59%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+ P++ C V++ L + I+ + ICN E + E+ + + ++ GD+RSA+N+LQ
Sbjct: 149 LRPLRDICVVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIAESSMGDMRSAINDLQ 208
Query: 693 STAQ 704
+ A+
Sbjct: 209 TVAE 212
>UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1;
Encephalitozoon cuniculi|Rep: DNA REPLICATION FACTOR C
SUBUNIT - Encephalitozoon cuniculi
Length = 568
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 47 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK-TGNAPNIIIAGPPGV 223
EK + +++ W EKYRP D+IVGN+ V +L + + ++++G PG+
Sbjct: 97 EKAASRDECGSASSGVWSEKYRPSKRDEIVGNQGIVKQLEDYLQGRTKYKAVLLSGQPGI 156
Query: 224 GKTTT 238
GKTTT
Sbjct: 157 GKTTT 161
Score = 37.9 bits (84), Expect = 0.26
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMT 423
V+E NAS+ R + NK+K F + L PG + K++I+DE D M+
Sbjct: 173 VIEFNASDVRSKLEISNKVKAFVSSQSILRPGSSKSKVLIMDEVDGMS 220
Score = 33.1 bits (72), Expect = 7.5
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
I + S C LR+ + QIL++V +I + E + ++ ++ GD+R ++ +Q
Sbjct: 252 IRTLSSYCLDLRFRKPDARQILSRVKQILDMEGKKIPDGLLNEIISRGAGDIRYTISMVQ 311
Query: 693 STA 701
S A
Sbjct: 312 SIA 314
>UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridia|Rep: DNA polymerase III, subunits
gamma and tau - Moorella thermoacetica (strain ATCC
39073)
Length = 589
Score = 47.6 bits (108), Expect = 3e-04
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTME 459
VLE++A+++RGID +RN I +K+ L P GR+K+ I+DE +T A AL +T+E
Sbjct: 91 VLEMDAASNRGIDEIRNLI-----EKIPLGPVEGRYKVYIIDEVHMLTQEAFNALLKTLE 145
Query: 460 LYSSTTRFALAANNSER 510
+ F LA +
Sbjct: 146 EPPAHAVFILATTEPRK 162
Score = 37.5 bits (83), Expect = 0.35
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
++RP+TF ++VG E L +TG + + GP G GKT+T LA+
Sbjct: 10 QWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILAR 61
>UniRef50_O48696 Cluster: F3I6.23 protein; n=3; Arabidopsis
thaliana|Rep: F3I6.23 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 525
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 50 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVF---AKTGNAPNIIIAGPPG 220
K+ SSS + P E+ RP+T DD+VG + +S ++ ++ P+I+ GPPG
Sbjct: 88 KRHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPG 147
Query: 221 VGKTTTILCLAQLSSE 268
GKT+ L S +
Sbjct: 148 TGKTSIAKSLINSSKD 163
>UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1;
Methanoculleus marisnigri JR1|Rep: Replication factor C
large subunit - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 454
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLA 253
+ W+EKYRPQ D+VGN V + +A+ + +I+ G PG GKT++ LA
Sbjct: 1 MDWVEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALA 57
Score = 32.7 bits (71), Expect = 9.9
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +3
Query: 543 LRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHIS 722
+++ L I+ ++ +IC E ++ + + A GD+R+A+N L + A G H++
Sbjct: 151 VQFRALQARSIVPRLRQICAAEGVACDPAALDDIANRAGGDMRAAVNMLYAAAIGKEHLA 210
Query: 723 PDNV 734
+V
Sbjct: 211 AGDV 214
>UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 140 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 718
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APN---IIIAGPPGVGKTT 235
S + W EKYRPQT D++GN++ +++ + P+ +++AG PGVGKTT
Sbjct: 241 SNEIIWTEKYRPQTKSDLIGNKNQIAKFYTWINKWEKVIPDRRAVLLAGAPGVGKTT 297
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/61 (27%), Positives = 39/61 (63%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
++P+ + C + +S++S +++ ++ IC+KE + ++E ++ + A GD+R +N LQ
Sbjct: 391 MQPLINVCETINFSKISVSELTERLKYICDKEGVHVSDENLNQIASKAHGDVRYGINMLQ 450
Query: 693 S 695
S
Sbjct: 451 S 451
>UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit;
n=8; Alphaproteobacteria|Rep: Possible DNA polymerase
III tau subunit - Rhodopseudomonas palustris
Length = 623
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLAQ 256
KYRP +FDD++G E V ++ TG P I+ G GVGKTTT LA+
Sbjct: 33 KYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILAR 84
>UniRef50_Q0C7D8 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 816
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Frame = +2
Query: 47 EKKQVKPSSSKSTN--LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-----III 205
++++ P S++S + LPW ++Y PQ D++ ++ V+ + + K A N +++
Sbjct: 172 DRRKTSPPSTQSPDGQLPWTQRYPPQDLDELAVHKKKVADVNAWLKDALAGNSRRRLLVL 231
Query: 206 AGPPGVGKTTTILCLAQ 256
GP G GKTTT+ LA+
Sbjct: 232 RGPAGSGKTTTVSLLAK 248
>UniRef50_UPI0000499B2D Cluster: AAA family ATPase; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: AAA family ATPase - Entamoeba
histolytica HM-1:IMSS
Length = 611
Score = 46.8 bits (106), Expect = 6e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +2
Query: 47 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVF---AKTGNAPNIIIAGPP 217
++++ P K +P EK RP+ +DI+G ED ++ F K + I+ GPP
Sbjct: 29 DRQEKSPQEIKQIYIPLAEKQRPKNLEDIIGQEDILAIGTPFNTMIKNDKIQSTILYGPP 88
Query: 218 GVGKTT 235
G GKTT
Sbjct: 89 GCGKTT 94
Score = 37.5 bits (83), Expect = 0.35
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSD---AQILAKVI--EICNKENLSYTEEGVSAVVFTAQGDLR 671
E+ + SRC ++ +L+D +I+ K I E CN + + EG+ + + GD R
Sbjct: 177 ELNNALMSRCQLVTLKKLTDEDVVKIMRKAIDEEYCNSK-IDIDNEGLHFIAAISDGDAR 235
Query: 672 SALNNLQSTAQGFGHIS 722
SALN L+ F +S
Sbjct: 236 SALNTLEKVFVHFNLMS 252
>UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau
subunits; n=5; Alphaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Caulobacter crescentus
(Caulobacter vibrioides)
Length = 608
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
KYRP+TF+D++G E V LA TG A ++ G GVGKTTT LA+
Sbjct: 62 KYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLAR 113
>UniRef50_Q3CFZ5 Cluster: AAA ATPase, central region; n=3;
Bacteria|Rep: AAA ATPase, central region -
Thermoanaerobacter ethanolicus ATCC 33223
Length = 443
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
N P ++ RP+T D+ VG E + + L + N ++I+ GPPGVGKTT + +A
Sbjct: 16 NKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN 75
Query: 257 LSS 265
+++
Sbjct: 76 MTN 78
>UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau;
n=14; Bacteroidetes|Rep: DNA polymerase III subunit
gamma/tau - Gramella forsetii (strain KT0803)
Length = 653
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQLSSEYLSK 280
KYRPQTF D+VG + + LA + A ++ GP GVGKTT LA++ ++ ++
Sbjct: 10 KYRPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILAKMINQKETQ 69
Query: 281 TP 286
P
Sbjct: 70 DP 71
Score = 36.7 bits (81), Expect = 0.61
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTME 459
+ EL+A+++ +D +RN I +V +PP G +K+ I+DE ++ A A +T+E
Sbjct: 79 IFELDAASNNSVDDIRNLI-----DQVRIPPQVGNYKVYIIDEVHMLSASAFNAFLKTLE 133
Query: 460 LYSSTTRFALAANNSER 510
F LA +
Sbjct: 134 EPPKHAIFILATTEKHK 150
>UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Replication
factor C large subunit - Methanosphaera stadtmanae
(strain DSM 3091)
Length = 534
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPN--IIIAGPPGVGKTTTILCLAQ 256
+ W+EKY P+ D++GN +++ V+A + P +++ GPPG+GKTT +A
Sbjct: 1 MKWVEKYAPKKLGDVLGNAKAKAQIEVWANKWSKGVPQKPLLLMGPPGIGKTT----IAH 56
Query: 257 L-SSEYLSKT 283
L EY S+T
Sbjct: 57 LVGKEYFSET 66
Score = 41.5 bits (93), Expect = 0.021
Identities = 18/71 (25%), Positives = 41/71 (57%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA 701
I+ +C ++++++ I A++ IC +E++ Y E + + + GDLRSA+ +L++
Sbjct: 147 IKPKCQGIKFTKVHTNSINAQLKRICAREDIEYDSEALYTLSKESNGDLRSAITSLEAIV 206
Query: 702 QGFGHISPDNV 734
I+ D++
Sbjct: 207 DNDKKITKDSL 217
Score = 38.7 bits (86), Expect = 0.15
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +1
Query: 253 AALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT--- 423
A L+G + +E+NAS+ R D++++ I AQ + G +K++I+DE D ++
Sbjct: 55 AHLVGKEYFSETIEVNASDKRSYDIIKSSIGEAAQTRSLFHSG-YKLLIMDEVDGISGRD 113
Query: 424 -DGAQQALRRTMELYSSTTRFALAANNS 504
G +A+ T++ +S L AN++
Sbjct: 114 DSGGARAVNETIK--NSKQPIILMANDA 139
>UniRef50_P40151 Cluster: DNA-dependent ATPase MGS1; n=6;
Saccharomycetales|Rep: DNA-dependent ATPase MGS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 587
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +2
Query: 77 KSTNLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTIL 244
K ++LP EK RP+ D VG + +S+ L + K G P++I+ GPPGVGKT+
Sbjct: 129 KISHLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLAR 188
Query: 245 CLAQLSS 265
L + ++
Sbjct: 189 LLTKTAT 195
>UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; canis group|Rep: DNA polymerase III, subunits
gamma and tau - Ehrlichia chaffeensis (strain Arkansas)
Length = 505
Score = 46.4 bits (105), Expect = 7e-04
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA 701
I SRC + R+S +++ + + KEN+S+ EE + + + A G +R+AL+ L+ A
Sbjct: 176 IISRCQRFDFQRISTDKLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAA 235
Query: 702 QGFGHISPDNVFK 740
I +N+ K
Sbjct: 236 IYSNKILSENITK 248
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAP-NIIIAGPPGVGKTT 235
KYRP F D++G E V L P +I++ G GVGKTT
Sbjct: 19 KYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTT 63
>UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1;
Dictyostelium discoideum AX4|Rep: Replication factor C
subunit - Dictyostelium discoideum AX4
Length = 1401
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Frame = +2
Query: 77 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APN-------IIIAGPPGVGK 229
K ++ W+EKYRP+ +DIVGN + N AP ++++GPPG+GK
Sbjct: 845 KGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGK 904
Query: 230 TTTILCLAQ 256
T+ L + +
Sbjct: 905 TSAALLICK 913
>UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
5, putative - Leishmania major
Length = 351
Score = 46.4 bits (105), Expect = 7e-04
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +1
Query: 385 HKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
+K+V+L+E D M+ AQ ALRRTME Y +T R L N++ R
Sbjct: 132 YKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSR 173
Score = 38.7 bits (86), Expect = 0.15
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
W+++YRP+T D+ + L +K + P+++ GP G GK T + +
Sbjct: 3 WVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAM 54
>UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C large
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 610
Score = 46.4 bits (105), Expect = 7e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPN---IIIAGPPGVGKTTTILCLA 253
+ W EKYRP+T D+VGN V L +A+ P +I+ GP G+GKT++ LA
Sbjct: 10 IEWAEKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALA 69
Score = 43.6 bits (98), Expect = 0.005
Identities = 17/62 (27%), Positives = 36/62 (58%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA 701
+++ C +++ + ++ + ++C E +S ++E V + A GD RSA+N+LQ+ A
Sbjct: 155 VRNICLEIKFGSVQSRSMVPALKKVCESEGVSCSQEAVLQIAENAGGDFRSAINDLQAAA 214
Query: 702 QG 707
G
Sbjct: 215 NG 216
>UniRef50_Q97CY0 Cluster: Lon-like ATP-dependent protease; n=8;
Clostridiales|Rep: Lon-like ATP-dependent protease -
Clostridium acetobutylicum
Length = 634
Score = 46.0 bits (104), Expect = 0.001
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +2
Query: 110 RPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSSEYLSKTPY 289
RPQTF +IVG E + L + +II+ GPPGVGKTT A+++ E + K Y
Sbjct: 168 RPQTFSEIVGQERAIKALVSKLASPYPQHIILYGPPGVGKTTA----ARIALEEVKKLKY 223
>UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Symbiobacterium thermophilum|Rep: DNA polymerase
III gamma and tau subunits - Symbiobacterium
thermophilum
Length = 570
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
I SRC Y RLS +I+A++ E+C K+ L + E ++A+ A G +R AL+ L
Sbjct: 166 ILSRCQAFDYRRLSADEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLL 221
Score = 39.5 bits (88), Expect = 0.086
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRTME 459
++E++A+++RGID +R+ + KV P ++K+ I+DE +T+ A AL +T+E
Sbjct: 90 LIEIDAASNRGIDEIRD-----LRDKVNFAPVELKYKVYIIDEVHMLTEPAFNALLKTLE 144
Query: 460 LYSSTTRFALAANNSER 510
+ F LA ++
Sbjct: 145 EPPAHVLFVLATTEKQK 161
Score = 36.3 bits (80), Expect = 0.80
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
+L +YRPQ F ++VG E L G + +++GP G GKTT LA+
Sbjct: 3 HLALYREYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAK 60
>UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Helicobacter|Rep: DNA polymerase III gamma and tau
subunits - Helicobacter pylori (Campylobacter pylori)
Length = 578
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
++E++ +++RGID VRN I+ Q + GR+KI I+DE T A AL +T+E
Sbjct: 88 IIEMDGASNRGIDDVRNLIE---QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEP 144
Query: 466 SSTTRFALAANNS 504
S +F LA ++
Sbjct: 145 PSHVKFLLATTDA 157
>UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Parvularcula bermudensis HTCC2503|Rep: DNA
polymerase III subunits gamma and tau - Parvularcula
bermudensis HTCC2503
Length = 607
Score = 46.0 bits (104), Expect = 0.001
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KYRPQ+FDD++G+E V L FA A I+ G GVGKTTT +A+
Sbjct: 20 KYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIAR 71
>UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 335
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/92 (26%), Positives = 50/92 (54%)
Frame = +3
Query: 465 FQYNSFCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV 644
++ F I+++ +I PI+SRC + + + + + +I E + + ++G+ V
Sbjct: 149 YEATQFVIATRQPSAVIPPIRSRCFPVVMREPTHEETASVLEDIVTAEGVDHDDDGIEYV 208
Query: 645 VFTAQGDLRSALNNLQSTAQGFGHISPDNVFK 740
A+GDLR+A+ Q+TA+ G ++ D F+
Sbjct: 209 AGYAEGDLRTAVLAAQTTAEAEGEVTMDAAFE 240
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 379 GRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALA 492
G +K ++LD A+ M + QQALRR ME Y T+F +A
Sbjct: 120 GSYKTILLDNAEGMREDFQQALRRVMEQYYEATQFVIA 157
>UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Petrotoga mobilis SJ95|Rep: DNA polymerase
III, subunits gamma and tau - Petrotoga mobilis SJ95
Length = 467
Score = 45.6 bits (103), Expect = 0.001
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +1
Query: 271 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 450
SF D V+E++A+++RGID +RN I+ + + G++K+ I+DE +T A AL +
Sbjct: 85 SFLD-VIEMDAASNRGIDEIRN-IRDSSNYRPVY--GKYKVYIIDEFHMLTREAFNALLK 140
Query: 451 TMELYSSTTRFALAANNSER 510
T+E S F LA N E+
Sbjct: 141 TLEEPPSHVIFILATTNLEK 160
Score = 37.9 bits (84), Expect = 0.26
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQL 259
KYRP+ FD+I+G V K + I +GP G GKTTT LA++
Sbjct: 8 KYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKV 60
>UniRef50_Q6BUL9 Cluster: Similarities with CA0979|IPF19713 Candida
albicans; n=1; Debaryomyces hansenii|Rep: Similarities
with CA0979|IPF19713 Candida albicans - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 842
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
N+P E RP++ ++++G ++ + F + G P++I+ GPPGVGKT+ LA
Sbjct: 155 NIPLFEVIRPKSLNEVIGQTHLINNHNGTIKNFIRLGYLPSMILHGPPGVGKTSIASILA 214
Query: 254 Q 256
Q
Sbjct: 215 Q 215
>UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4;
Pyrobaculum|Rep: Replication factor C large subunit -
Pyrobaculum aerophilum
Length = 422
Score = 45.6 bits (103), Expect = 0.001
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVF--------------------AKTGNAPNIIIA 208
LPWIEKYRP++F +IV E+ LA + + A I++A
Sbjct: 3 LPWIEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILLA 62
Query: 209 GPPGVGKTTTILCLAQ 256
GPPGVGKTT + LA+
Sbjct: 63 GPPGVGKTTLVHALAR 78
Score = 43.2 bits (97), Expect = 0.007
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3
Query: 519 PIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQST 698
P++ V+ RLS+ +++ + IC E EE + ++ ++ GDLR+A+N+LQ
Sbjct: 164 PLRDISLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSMGDLRAAINDLQMY 223
Query: 699 AQG 707
G
Sbjct: 224 LSG 226
>UniRef50_UPI00015B6046 Cluster: PREDICTED: similar to werner
helicase interacting protein; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to werner helicase
interacting protein - Nasonia vitripennis
Length = 462
Score = 45.2 bits (102), Expect = 0.002
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +2
Query: 50 KKQVKPS-SSKSTNLPWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPP 217
K Q K + +K ++ P EK RP D VG + + L + G P++I+ GPP
Sbjct: 53 KDQTKQTFGNKKSHAPLAEKMRPNELSDYVGQSHLIGPKTLLHDLLRNGEIPSMILWGPP 112
Query: 218 GVGKTTTILCLAQLSSEYLSKTP 286
G GKT+ + + Q S+ LS P
Sbjct: 113 GCGKTSLVNVIMQ-ESKKLSDIP 134
>UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3;
Cyanobacteria|Rep: DNA-directed DNA polymerase -
Cyanothece sp. CCY 0110
Length = 692
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
P KYRPQTF D+VG E + L+ A AP + GP G GKT++ LA+
Sbjct: 12 PLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAK 67
Score = 35.9 bits (79), Expect = 1.1
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ G+D +R I+ V R+K+ ++DE ++ A AL +T+E
Sbjct: 99 VIEIDAASNTGVDNIREIIERSQFAPVQC---RYKVYVIDECHMLSVAAFNALLKTLEEP 155
Query: 466 SSTTRFALAANNSER 510
F LA + +R
Sbjct: 156 PERVIFVLATTDPQR 170
>UniRef50_Q5AF80 Cluster: Putative uncharacterized protein RAD24;
n=1; Candida albicans|Rep: Putative uncharacterized
protein RAD24 - Candida albicans (Yeast)
Length = 589
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +2
Query: 62 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTV-----SRLAVFAKTGNAPNIIIAGPPGVG 226
K ++ + N WI+KYRP+T +I N + S + + KT N ++++GP G
Sbjct: 45 KSQTTINNNQQWIDKYRPKTTSEICINPTKLKQVKESMMKMINKTSNTRVLVLSGPSGSS 104
Query: 227 KTTTILCLAQ 256
K+TT+ LA+
Sbjct: 105 KSTTVKLLAE 114
>UniRef50_Q5UQE8 Cluster: Putative replication factor C small
subunit L478; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L478 -
Mimivirus
Length = 370
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+ EKYRP+ D + N D + +L A + P+III+GP G GK T + L +
Sbjct: 3 FFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLE 56
Score = 41.1 bits (92), Expect = 0.028
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 325 VVRNKIKMFAQQK---VTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAA 495
+++ IK +A K + + K +++ +++ + +Q ALRRTME Y+ T RF +
Sbjct: 104 ILQEIIKQYAMHKSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVC 163
Query: 496 NN 501
NN
Sbjct: 164 NN 165
>UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5;
Sulfolobaceae|Rep: Replication factor C large subunit -
Sulfolobus tokodaii
Length = 440
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/72 (25%), Positives = 41/72 (56%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+ P+++ ++ RL+ + + +IC E ++ +E + ++ ++GD R A+N LQ
Sbjct: 147 LRPLRNAVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFIIEQSEGDARYAINMLQ 206
Query: 693 STAQGFGHISPD 728
A+G+G ++ D
Sbjct: 207 GVAEGYGRVTLD 218
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG--NAPN---IIIAGPPGVGKTTTILCLA 253
L W KYRP+T +++ ED L + ++ PN +++ GPPGVGKTT LA
Sbjct: 3 LQWFLKYRPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALA 62
Query: 254 Q 256
+
Sbjct: 63 R 63
>UniRef50_UPI0000F31775 Cluster: Cell cycle checkpoint protein RAD17
(hRad17) (RF-C/activator 1 homolog).; n=1; Bos
taurus|Rep: Cell cycle checkpoint protein RAD17 (hRad17)
(RF-C/activator 1 homolog). - Bos Taurus
Length = 611
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG---NAPN-----IIIAGPPGVGKTT 235
S N PW++KY+P+T ++ ++ + + + K P ++I GPPG GKTT
Sbjct: 86 SENEPWVDKYKPETQHELAVHKKKIEEVETWLKAEVLERQPKQGGSILLITGPPGCGKTT 145
Query: 236 TILCLAQ 256
TI LA+
Sbjct: 146 TIKILAK 152
>UniRef50_Q8R5R3 Cluster: Uncharacterized ATPase related to the
helicase subunit of the Holliday junction resolvase;
n=2; Bacteria|Rep: Uncharacterized ATPase related to the
helicase subunit of the Holliday junction resolvase -
Thermoanaerobacter tengcongensis
Length = 440
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
N P ++ RP+T D+ VG E + + L + + ++I+ GPPGVGKTT + +A
Sbjct: 15 NRPLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGPPGVGKTTLAMIIAN 74
Query: 257 LSS 265
+++
Sbjct: 75 MTN 77
>UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n=4;
Prochlorococcus marinus|Rep: DNA polymerase III
gamma/tau subunit - Prochlorococcus marinus
Length = 559
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 83 TNLPWIEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLAQL 259
T P +KYRP+ FDD+VG + V+ L AP + GP G GKT++ LA+
Sbjct: 4 TYQPLHQKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILARS 63
Query: 260 SSEYLSKTP 286
+ S+ P
Sbjct: 64 LNCQQSEKP 72
Score = 39.5 bits (88), Expect = 0.086
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
++E++A+++ G+D +R I+ + + R K+ ++DE ++ A AL +T+E
Sbjct: 94 IIEIDAASNTGVDNIRELIE---RSQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP 150
Query: 466 SSTTRFALAANNSER 510
S T F LA + +R
Sbjct: 151 PSQTVFVLATTDPQR 165
>UniRef50_A1VDA3 Cluster: AAA ATPase, central domain protein; n=4;
Desulfovibrionaceae|Rep: AAA ATPase, central domain
protein - Desulfovibrio vulgaris subsp. vulgaris (strain
DP4)
Length = 411
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQL 259
S P E+ RP + VG R+ + P++++ GPPG GK+T L LA+
Sbjct: 2 SVRQPLPERLRPTVLEGFVGQTHLTQRIEALLRANRLPSLLLFGPPGCGKSTLALLLAKA 61
Query: 260 SS 265
S
Sbjct: 62 RS 63
>UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2;
Ascomycota|Rep: Replication factor C subunit 5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 358
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
K+V+++ AD +T AQ ALRRTME YS+ R L AN++ +
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSK 169
Score = 42.3 bits (95), Expect = 0.012
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
W+++YRP+T + ++ RL + T P++++ GP G GK T ++ +
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAI 54
>UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Thermotoga|Rep: DNA polymerase III, gamma and tau
subunit - Thermotoga maritima
Length = 478
Score = 44.4 bits (100), Expect = 0.003
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +1
Query: 271 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRR 450
+F D V+EL+A+++RGID +R + + G++K+ I+DE +T A AL +
Sbjct: 84 TFMD-VIELDAASNRGIDEIRRIRDAVGYRPME---GKYKVYIIDEVHMLTKEAFNALLK 139
Query: 451 TMELYSSTTRFALAANNSER 510
T+E S F LA N E+
Sbjct: 140 TLEEPPSHVVFVLATTNLEK 159
Score = 41.9 bits (94), Expect = 0.016
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFA--KTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KYRP+TF ++V N+D V + + A K A I AGP G GKTT LA+
Sbjct: 7 KYRPKTFSEVV-NQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAK 58
>UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit
gamma/tau; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to DNA polymerase III subunit gamma/tau -
Candidatus Kuenenia stuttgartiensis
Length = 558
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
+YRPQTF DIVG V L +T A + AGP GVGKT+T L++
Sbjct: 9 RYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSK 60
Score = 41.9 bits (94), Expect = 0.016
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTME 459
VLE++ +++RGID +RN +Q V P R ++I I+DE +T A AL +T+E
Sbjct: 90 VLEIDGASNRGIDEIRN-----IRQNVGFAPSRARYRIYIIDEVHMLTREAFNALLKTLE 144
Query: 460 LYSSTTRFALAANNSER 510
S +F A + R
Sbjct: 145 EPPSHVKFIFATTAANR 161
>UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; Cyanobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
CC9311)
Length = 643
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
P KYRPQ FD +VG E + L +G AP + +GP G GKT++ LA+
Sbjct: 7 PLHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILAR 62
Score = 36.3 bits (80), Expect = 0.80
Identities = 20/75 (26%), Positives = 41/75 (54%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ G+D +R+ I+ + + R K+ ++DE ++ A AL +T+E
Sbjct: 94 VIEIDAASNTGVDNIRDLIE---RSRFAPVQARWKVYVVDECHMLSTAAFNALLKTLEEP 150
Query: 466 SSTTRFALAANNSER 510
F LA + +R
Sbjct: 151 PPQVVFVLATTDPQR 165
>UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Hyphomonas neptunium ATCC 15444|Rep: DNA
polymerase III, subunits gamma and tau - Hyphomonas
neptunium (strain ATCC 15444)
Length = 578
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
KYRP+ F+D++G E V L+ +TG A ++ G GVGKTTT LA+
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLAR 86
>UniRef50_Q9C587 Cluster: Replication factor C large subunit-like
protein; n=7; Magnoliophyta|Rep: Replication factor C
large subunit-like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 956
Score = 44.4 bits (100), Expect = 0.003
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 24/93 (25%)
Frame = +2
Query: 53 KQVKPSSSKS----TNLPWIEKYRPQTFDDIVGNEDTVSRL--------AVFAKTGNAPN 196
K+V P+ K+ T+LPW EKYRP+ ++IVGN+ V++L F TG+
Sbjct: 324 KKVPPAKGKNKIIETSLPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGK 383
Query: 197 ------------IIIAGPPGVGKTTTILCLAQL 259
++++G PG+GKTT+ ++Q+
Sbjct: 384 GKKLNDAGSKKAVLLSGTPGIGKTTSAKLVSQM 416
>UniRef50_Q59Y48 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 547
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +2
Query: 74 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRL--AV--FAKTGNAPNIIIAGPPGVGKTT 235
SK T+L E RP TF+ VG + ++ + A+ F K G P++I GP G+GKTT
Sbjct: 19 SKLTSLSLSEAIRPTTFEQYVGQDHLINPIDGAIRNFIKLGYLPSMIFTGPSGIGKTT 76
>UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory
receptor Olr396, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to olfactory receptor
Olr396, partial - Ornithorhynchus anatinus
Length = 208
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 110 RPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
RP+ D++ E+ V+ L + + PN++ GPPG GKT+TIL A+
Sbjct: 117 RPKRVDEVAYQEEVVAVLRRSLEGADLPNLLFYGPPGTGKTSTILAAAR 165
Score = 44.0 bits (99), Expect = 0.004
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Frame = +1
Query: 241 TMLSAA--LLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKV 366
T+L+AA L G F+ VLELNAS++RGI VVR K+K FAQ V
Sbjct: 159 TILAAARELYGPELFRQRVLELNASDERGIQVVREKVKTFAQLTV 203
>UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2;
Candidatus Blochmannia|Rep: DNA polymerase III subunit
gamma - Blochmannia floridanus
Length = 541
Score = 44.0 bits (99), Expect = 0.004
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +3
Query: 516 EPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY-TEEGVSAVVFTAQGDLRSALNNL- 689
E I SRC + L+ QI+ ++ ICN+EN++ TE + + + A+G +R ALN L
Sbjct: 164 ETILSRCLQFYFKPLNIIQIVTQLKYICNQENINIDTENSLEFLAYAARGSIRDALNLLE 223
Query: 690 QSTAQGFGHISPD 728
Q+ G +I+ D
Sbjct: 224 QAMILGKNNITID 236
>UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
DNA-directed DNA polymerase gamma/tau subunit -
Pelagibacter ubique
Length = 557
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
KYRPQTF+D++G + ++ K PN + G G+GKTTT +A+
Sbjct: 11 KYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAK 62
Score = 35.5 bits (78), Expect = 1.4
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
VLE++A++ G+D VR+ I+ T ++KI I+DE ++ A AL +T+E
Sbjct: 93 VLEMDAASKTGVDDVRDLIEFSRYGPTT---AKYKIFIIDEVHMLSKQAFNALLKTLEEP 149
Query: 466 SSTTRFALAANNSER 510
+F A ++
Sbjct: 150 PEYLKFIFATTEIKK 164
>UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 825
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+I+E I SRC + R+ + I ++ +C +E Y +E ++ V A+G +R AL+
Sbjct: 168 KILETILSRCQRFDFHRIGNEDIEHRLSYVCEQEGFDYDDEALAIVARHAKGGMRDALST 227
Query: 687 L-QSTAQGFGHISPDN 731
L Q + G G + D+
Sbjct: 228 LEQLSVFGNGSVHADD 243
Score = 40.7 bits (91), Expect = 0.037
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
KYRP TFD +VG + VS L G + + GP G GKTT LA+
Sbjct: 7 KYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAK 58
Score = 37.1 bits (82), Expect = 0.46
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTME 459
V EL+A++ G+D VR +I V P G++KI I+DE +T A AL +T+E
Sbjct: 96 VYELDAASRTGVDNVREEII----NSVNFAPVRGKYKIYIIDEVHMLTTAAFNALLKTLE 151
Query: 460 LYSSTTRFALAANNSER 510
+ F L + ++
Sbjct: 152 EPPAHVIFVLCTTDPQK 168
>UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Leptospirillum sp. Group II UBA|Rep:
Putative DNA polymerase III, gamma/tau subunits -
Leptospirillum sp. Group II UBA
Length = 540
Score = 44.0 bits (99), Expect = 0.004
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
ST L K+RPQ F D+VG E V L +G P ++ +G GVGKTT LA+
Sbjct: 2 STILSLARKWRPQLFSDLVGQEFVVRALTGTLGSGKLPQALLFSGDRGVGKTTVARILAK 61
>UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 996
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +2
Query: 77 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
++ L W +KYRP+T + + + +L T P+II GPPG GK++ LC A
Sbjct: 681 ENIRLFWADKYRPRTLGGFTCHREQIEQLKQLVSTEFCPHIIFKGPPGSGKSS--LCRA 737
>UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5;
Halobacteriaceae|Rep: Replication factor C large subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 508
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPNIIIAGPPGVGKTTTILCLA 253
+ W EKYRP T ++ GN+ L +A+T + +I+ G PG+GKT+ LA
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALA 57
Score = 32.7 bits (71), Expect = 9.9
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 289 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALRRTM 456
+ELNAS+ R DV+ N++ A + TL G ++VI+DEAD++ A + R +
Sbjct: 65 IELNASDSRTKDVI-NRVAGEAAKSGTLTAGGGGRRLVIMDEADNIHGNADRGGARAI 121
>UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Synechococcus|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
B-Prime)
Length = 779
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
KYRPQ F D+VG V LA + G AP + GP G GKT++ LA+
Sbjct: 13 KYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAK 64
Score = 39.1 bits (87), Expect = 0.11
Identities = 22/75 (29%), Positives = 41/75 (54%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
VLE++A+++ G+D +R I+ V R+K+ ++DE +++ A AL +T+E
Sbjct: 94 VLEIDAASNTGVDNIRELIERAQFAPVN---SRYKVYVIDECHMLSNAAFNALLKTLEEP 150
Query: 466 SSTTRFALAANNSER 510
F LA + +R
Sbjct: 151 PPRVVFVLATTDPQR 165
Score = 33.9 bits (74), Expect = 4.3
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
++ I SRC + R+ ++A + +I +E + T E + V +QG LR A L
Sbjct: 166 VLPTIVSRCQRFDFRRIPLDDMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLL 225
Query: 690 QSTAQGFGHISPDNVF 737
+ G I+P+ V+
Sbjct: 226 DQLSLLEGSITPEAVW 241
>UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Cystobacterineae|Rep: DNA polymerase III,
subunits gamma and tau - Anaeromyxobacter sp. Fw109-5
Length = 606
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
KYRPQ F ++ G + V L+ KTG A + GP GVGKTTT +A+
Sbjct: 9 KYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAK 60
Score = 38.7 bits (86), Expect = 0.15
Identities = 20/72 (27%), Positives = 41/72 (56%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ G+D VR+ ++ + R+K+ ++DE ++ GA AL +T+E
Sbjct: 90 VVEIDAASNNGVDNVRDIVEAVKYRPAR---DRYKVFVVDEVHMLSTGAFNALLKTLEEP 146
Query: 466 SSTTRFALAANN 501
+F LA +
Sbjct: 147 PEHVKFVLATTD 158
>UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Cyanothece sp. CCY 0110|Rep: DNA polymerase III
gamma and tau subunits - Cyanothece sp. CCY 0110
Length = 373
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCL 250
+K PW KYRPQ+ +D+ G + L + P ++++GP G GKT+T +
Sbjct: 6 TKQAFQPWHLKYRPQSINDLTGQDSVQKVLTRLIAEDSVPQALLLSGPKGTGKTSTARII 65
Query: 251 A 253
A
Sbjct: 66 A 66
Score = 42.7 bits (96), Expect = 0.009
Identities = 23/75 (30%), Positives = 42/75 (56%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+EL+A++ G+D +R K+ A R ++ I+DEA +++ AQ A +T+E
Sbjct: 97 VVELDAASHNGVDDIR---KLVADASYAPFSARTRVFIIDEAHQLSNSAQNAFLKTLEEP 153
Query: 466 SSTTRFALAANNSER 510
++ T+F LA +
Sbjct: 154 NNHTKFLLATTEPHK 168
Score = 39.5 bits (88), Expect = 0.086
Identities = 20/79 (25%), Positives = 43/79 (54%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+++E ++SRC LR+ +S +++ ++ EI E S + + A+ +++G +R ++
Sbjct: 168 KMLETVRSRCLPLRFRPISQSEVAKRLEEIAKNEGFSIDDSCLQAIARSSKGGMR---DS 224
Query: 687 LQSTAQGFGHISPDNVFKV 743
+Q + F H D KV
Sbjct: 225 IQLLFEVFCHKEGDEPLKV 243
>UniRef50_A0RY55 Cluster: Replication factor C/ATPase involved in
DNA replication; n=2; Thermoprotei|Rep: Replication
factor C/ATPase involved in DNA replication -
Cenarchaeum symbiosum
Length = 386
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPNIIIAGPPGVGKTT 235
W EK+RP+ +VGNE+ + L+ + K G P +++ GPPG GKTT
Sbjct: 3 WSEKHRPRDIPSMVGNEEARAALSGWFSKWKKGTKP-VLLVGPPGTGKTT 51
>UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12;
Saccharomycetales|Rep: Replication factor C subunit 5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 354
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +1
Query: 382 RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANN 501
R+K VI++EA+S+T AQ ALRRTME YS R + ++
Sbjct: 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS 173
Score = 39.9 bits (89), Expect = 0.065
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSS 265
W++KYRP++ + + NE+ + L ++ + + P++++ GP G GK T C+A L S
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTR--CMALLES 59
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSY-TEEGVSAVVFTAQGDLRSALNN 686
II PI+SRC ++R SD++I + ++ E + T++ + + + G+LR +L
Sbjct: 177 IIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLM 236
Query: 687 LQSTA 701
L+S A
Sbjct: 237 LESMA 241
>UniRef50_Q58812 Cluster: Putative protease La homolog; n=1;
Methanocaldococcus jannaschii|Rep: Putative protease La
homolog - Methanococcus jannaschii
Length = 649
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +2
Query: 113 PQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSSEYLSKTPY 289
P+ D ++G E+ V V + N N+I+ G PGVGK+ + + ++ S++ TPY
Sbjct: 17 PRLIDQVIGQEEAVK--IVLSAVKNKRNVILLGDPGVGKSMIVKAVGEILSDFGEFTPY 73
>UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6;
Rhizobiales|Rep: DNA polymerase III subunit tau -
Bartonella henselae (Rochalimaea henselae)
Length = 646
Score = 43.2 bits (97), Expect = 0.007
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
KYRPQ F D++G E V L +TG A ++ G GVGKTTT LA+
Sbjct: 16 KYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILAR 67
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A++ GID +R I+ + V+ R+K+ I+DE ++ A L +T+E
Sbjct: 101 VIEMDAASHTGIDDIREIIEQIRYRPVS---ARYKVYIIDEVHMLSTQAFNGLLKTLEEP 157
Query: 466 SSTTRFALA 492
+F A
Sbjct: 158 PPHVKFIFA 166
Score = 34.3 bits (75), Expect = 3.2
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QST 698
I SRC R+ A + A + +I EN+ ++ +S + A+G R AL+ Q+
Sbjct: 177 ILSRCQRFDLRRIESAVLSAHLRQIAQHENVEVEDQALSMIARAAEGSARDALSIFDQAI 236
Query: 699 AQGFGHIS 722
A G IS
Sbjct: 237 AHSNGKIS 244
>UniRef50_Q67LR0 Cluster: ATP/GTP-binding domain protein; n=21;
Bacteria|Rep: ATP/GTP-binding domain protein -
Symbiobacterium thermophilum
Length = 438
Score = 43.2 bits (97), Expect = 0.007
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
P + RPQT D+ VG E V L + G+ P+ I+ GPPG GKTT +A
Sbjct: 17 PLAARMRPQTLDEFVGQEHLVGPGRFLRRALEAGHLPSCILFGPPGTGKTTLARLMA 73
>UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Rhodospirillales|Rep: DNA polymerase III subunit
gamma/tau - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 652
Score = 43.2 bits (97), Expect = 0.007
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KYRPQTFDD++G + V L F A ++ G GVGKTTT +A+
Sbjct: 44 KYRPQTFDDLIGQDSLVRILRRAFELKRVAHAFMLTGVRGVGKTTTARIIAR 95
>UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Arthrospira platensis|Rep: DNA polymerase III gamma
and tau subunits - Spirulina platensis
Length = 768
Score = 43.2 bits (97), Expect = 0.007
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
P KYRPQTF D+VG E L ++ AP + GP G GKT++ LA+
Sbjct: 5 PLHHKYRPQTFADLVGQEAIAQTLTNAIRSRRIAPAYLFTGPRGTGKTSSARILAK 60
Score = 35.9 bits (79), Expect = 1.1
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
++ I SRC + R+ + + I KEN++ T E V V AQG LR A + L
Sbjct: 300 VLPTIISRCQRFDFRRIPLQAMATHLETIAAKENIAITPEAVMMVAQIAQGGLRDAESLL 359
Query: 690 QSTAQGFGHISPDNVF 737
+ G I+ + V+
Sbjct: 360 DQLSLLSGEITVERVW 375
>UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Opitutaceae bacterium TAV2|Rep: DNA polymerase
III, subunits gamma and tau - Opitutaceae bacterium TAV2
Length = 388
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
K+RPQTFDD+VG + V L A+ A + GP G GKT+T A+
Sbjct: 12 KWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAK 63
>UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1;
Methylobacterium sp. 4-46|Rep: DNA-directed DNA
polymerase - Methylobacterium sp. 4-46
Length = 699
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTT 235
W EKYRP+ F D+VG + V+ + +++ GP G GKTT
Sbjct: 10 WDEKYRPRVFGDLVGQDGAVAWCKERVRERQVKTLLLHGPSGCGKTT 56
>UniRef50_A3WR59 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Nitrobacter sp. Nb-311A|Rep: DNA polymerase III
gamma and tau subunits - Nitrobacter sp. Nb-311A
Length = 553
Score = 43.2 bits (97), Expect = 0.007
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
++ ++SR + L A + + I +E ++Y EG+ + QG +R L
Sbjct: 26 QLTAALRSRLLEIEVRPLDVADAVEFLESIARREGIAYDREGLILLASVKQGHVRDLLGG 85
Query: 687 LQSTAQGFGHISPDNV 734
L+ A FGH+S +NV
Sbjct: 86 LEHVAGAFGHVSAENV 101
>UniRef50_P60373 Cluster: Replication factor C large subunit; n=1;
Nanoarchaeum equitans|Rep: Replication factor C large
subunit - Nanoarchaeum equitans
Length = 430
Score = 43.2 bits (97), Expect = 0.007
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +2
Query: 44 PEKKQVKPSSSKST--NLPWIEKYRPQTFDDIVGNEDTVSRLAVFA----KTGNAPNIII 205
P K+V+P K ++P KYRP+T D++ E L + K +++
Sbjct: 14 PVIKKVEPPKKKEIKRDIPLFIKYRPKTLDEVENQEQAKQILRDYVINYKKKYKGKALLL 73
Query: 206 AGPPGVGKTTTILCLA-QLSSEYL 274
GPPG GKT+++ LA +L E L
Sbjct: 74 YGPPGTGKTSSVYALANELGYEVL 97
>UniRef50_UPI0000DB7733 Cluster: PREDICTED: similar to Werner
helicase interacting protein isoform 1; n=1; Apis
mellifera|Rep: PREDICTED: similar to Werner helicase
interacting protein isoform 1 - Apis mellifera
Length = 433
Score = 42.7 bits (96), Expect = 0.009
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +2
Query: 101 EKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPNIIIAGPPGVGKTTTILCLAQLSSE 268
EK RP F D +G E V + + G+ P++I GPPG GKT+ ++++S E
Sbjct: 17 EKMRPACFHDYIGQEKVVGSNTILQQLLTKGHIPSMIFWGPPGCGKTSLTNIISKISKE 75
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
K+RPQ+F D+VG L+ K G P+ ++ GP G GKT++ LA+
Sbjct: 25 KWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAK 76
Score = 33.1 bits (72), Expect = 7.5
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 459
V+E++ +++ G+D +R A + G++KI I+DE ++ A AL +T+E
Sbjct: 106 VIEIDGASNNGVDAIRELRDTVAFMPSS---GKYKIYIIDEVHMLSTSAFNALLKTLE 160
>UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridiaceae|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium oremlandii OhILAs
Length = 563
Score = 42.7 bits (96), Expect = 0.009
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTME 459
V+E++A+++ G+D VR ++ V PP G++KI I+DE ++ GA AL +T+E
Sbjct: 90 VIEIDAASNNGVDNVRE-----IRENVKYPPSKGKYKIYIIDEVHMLSTGAFNALLKTLE 144
Query: 460 LYSSTTRFALAANNSER 510
S F LA +
Sbjct: 145 EPPSYVIFILATTEPHK 161
Score = 33.1 bits (72), Expect = 7.5
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
++RP+ F+D++G + ++ L + N A + G G GKT+T A+
Sbjct: 9 RFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFAR 60
>UniRef50_Q0SS35 Cluster: ATPase, AAA family; n=3; Clostridium|Rep:
ATPase, AAA family - Clostridium perfringens (strain
SM101 / Type A)
Length = 415
Score = 42.7 bits (96), Expect = 0.009
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLS 262
P + RP+ +DIVG + V L+ K N N I GPPGVGKTT LA +
Sbjct: 3 PLADIMRPKKLEDIVGQKHIVGEGTPLSNLIKNKNMINCIFYGPPGVGKTT----LANII 58
Query: 263 SEYLSKTPY 289
S Y K Y
Sbjct: 59 SNYTDKKFY 67
>UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Janibacter sp. HTCC2649|Rep: DNA polymerase III
subunits gamma and tau - Janibacter sp. HTCC2649
Length = 799
Score = 42.7 bits (96), Expect = 0.009
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQLSSEYLSK 280
+YRP+TF D++G E L +TG + + +GP G GKTT+ LA+ +
Sbjct: 11 RYRPETFVDVIGQEHVTEPLMQALRTGRVNHAYLFSGPRGCGKTTSARILARCLNCEQGP 70
Query: 281 TP 286
TP
Sbjct: 71 TP 72
>UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with a
BRCT domain at the N- terminus; n=2;
Cryptosporidium|Rep: DNA replication repC1, AAA+ ATpase
with a BRCT domain at the N- terminus - Cryptosporidium
parvum Iowa II
Length = 874
Score = 42.7 bits (96), Expect = 0.009
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +3
Query: 483 CISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQG 662
CI + E + + +C LR+SR S QI+ ++ EI NKE + + + +
Sbjct: 446 CICNDRMSEKVRNLAPKCYDLRFSRPSKVQIIKRMQEIANKEGMKIEPNAIELLCESVGN 505
Query: 663 DLRSALNNLQ 692
DLR LN LQ
Sbjct: 506 DLRQILNELQ 515
>UniRef50_Q8SQU0 Cluster: HSP 101 RELATED PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: HSP 101 RELATED PROTEIN -
Encephalitozoon cuniculi
Length = 851
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 98 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQL 259
+E+ R FD ++G ++ + R+ N I+ G PGVGKT + +AQL
Sbjct: 158 VEQARQNVFDPVIGRDEEIRRVLEILSKKTKSNAILVGKPGVGKTAIVNGIAQL 211
>UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: AAA ATPase,
central domain protein - Halorubrum lacusprofundi ATCC
49239
Length = 540
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLA 253
W EKYRP T ++ GN+ A +A++ + + +++ G PGVGKT+ LA
Sbjct: 44 WTEKYRPSTLSEVRGNDKARDAFADWARSWDDHHEAVVLHGSPGVGKTSAAHALA 98
Score = 40.3 bits (90), Expect = 0.049
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +3
Query: 543 LRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHIS 722
+ + +S I+ + +IC KE + + + + + +GDLR A+N+LQ+ +G I+
Sbjct: 204 IEFRDVSARSIVPVLRDICRKEGIEFESDALERIAERNRGDLRGAINDLQAATEGRDSIA 263
Query: 723 PDNV 734
++V
Sbjct: 264 VEDV 267
>UniRef50_O75943 Cluster: Cell cycle checkpoint protein RAD17; n=34;
Euteleostomi|Rep: Cell cycle checkpoint protein RAD17 -
Homo sapiens (Human)
Length = 681
Score = 42.7 bits (96), Expect = 0.009
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG---NAPN-----IIIAGPPGVGKTT 235
S N PW++KY+P+T ++ ++ + + + K P ++I GPPG GKTT
Sbjct: 86 SENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTT 145
Query: 236 TILCLAQ 256
T+ L++
Sbjct: 146 TLKILSK 152
>UniRef50_UPI0000E4A039 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 672
Score = 42.3 bits (95), Expect = 0.012
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 65 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPNIIIAGPPGVGKTT 235
PS + P E+ RP T D ++G + + GN P++I GPPG GKT+
Sbjct: 262 PSQPRPDFRPLAERMRPYTMDTLIGQNKALGATGTLRRLLDVGNIPSMIFWGPPGCGKTS 321
Query: 236 TILCLAQ 256
+A+
Sbjct: 322 LANVIAR 328
>UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III,
gamma/tau subunits; n=1; Brevibacterium linens BL2|Rep:
COG2812: DNA polymerase III, gamma/tau subunits -
Brevibacterium linens BL2
Length = 1148
Score = 42.3 bits (95), Expect = 0.012
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQLSSEYLSK 280
+YRP+TFD+++G E L + G + + +GP G GKTT+ LA+ +
Sbjct: 8 RYRPETFDEVIGQEHVTDPLKAAIERGRINHAYLFSGPRGCGKTTSARILARCLNCAKGP 67
Query: 281 TP 286
TP
Sbjct: 68 TP 69
>UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium novyi
NT|Rep: ATPase, AAA family - Clostridium novyi (strain
NT)
Length = 419
Score = 42.3 bits (95), Expect = 0.012
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
+ N P E+ RP+ ++ G + + + L +T N +II+ GPPGVGKTT +
Sbjct: 12 NVNKPLAERMRPRNLNEFFGQKHIIGKGKLLRRLIETDNLTSIILYGPPGVGKTTLAYII 71
Query: 251 A-QLSSEYL 274
+ + SE++
Sbjct: 72 SLETKSEFV 80
>UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_301_13398_14519 - Giardia lamblia
ATCC 50803
Length = 373
Score = 42.3 bits (95), Expect = 0.012
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +1
Query: 289 LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYS 468
LELN S DV + + + + K+V+L +AD ++ AQQALRR ME Y+
Sbjct: 90 LELNPSEMGNHDVFIIQTVLKETASTSSIGDKFKVVVLQDADKLSFTAQQALRRLMEQYA 149
Query: 469 STTRFALAANN 501
+T + L A +
Sbjct: 150 ATCKLILMAES 160
Score = 32.7 bits (71), Expect = 9.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 244
W KY P + + + D A+ N P++++ GP G G+ T +L
Sbjct: 2 WCNKYTPTQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRVL 51
>UniRef50_Q2U8Q6 Cluster: ATPase related to the helicase subunit of
the Holliday junction resolvase; n=2; Aspergillus|Rep:
ATPase related to the helicase subunit of the Holliday
junction resolvase - Aspergillus oryzae
Length = 518
Score = 42.3 bits (95), Expect = 0.012
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 77 KSTNLPWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 247
K N P E+ RP +FDDIVG + + F PN+I G G GKTT
Sbjct: 108 KPDNAPLAERVRPGSFDDIVGQNHLIGPNGTIRQFVHEDKIPNMIFWGSSGTGKTTIARI 167
Query: 248 LAQLS 262
+ +S
Sbjct: 168 IGDVS 172
>UniRef50_A5YSV5 Cluster: Replication factor C small subunit II;
n=4; Halobacteriaceae|Rep: Replication factor C small
subunit II - uncultured haloarchaeon
Length = 375
Score = 42.3 bits (95), Expect = 0.012
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +1
Query: 331 RNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALA 492
R+ I Q+ + P G +K V+LD A+++ + QQALRR ME Y T+F +A
Sbjct: 118 RDMISHVMQELASYQPASGTYKTVLLDNAETIREDFQQALRRVMERYHKNTQFIIA 173
Score = 35.1 bits (77), Expect = 1.8
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
+I PI+SRC + + +I + V +I E + E V+ + A GDLR A+
Sbjct: 180 LIPPIRSRCFPVPIRAPTADEIESVVTDIAAVEGVETDEMAVTLIASKADGDLRYAILAA 239
Query: 690 QSTA-QGFGHISPD 728
Q A +G G I+ D
Sbjct: 240 QHAAIEGDGAITTD 253
Score = 33.1 bits (72), Expect = 7.5
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
WIE++ P + + RL T N+II GPPGVGKT + Q
Sbjct: 7 WIERHAPALTE--LPQASARDRLTQI--TDEPMNLIIQGPPGVGKTAAVRAFTQ 56
>UniRef50_Q5UQK9 Cluster: Putative uncharacterized protein; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Putative
uncharacterized protein - Mimivirus
Length = 533
Score = 41.9 bits (94), Expect = 0.016
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +2
Query: 44 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTG---NAPNII 202
P K + + W++KY+P + I+G+++ ++R L+ F K N PN+I
Sbjct: 23 PNKDNKDDKNVDEEVINWLDKYKPTSSSQILGDKNNINRIKAFLSQFTKENAEINCPNLI 82
Query: 203 IAGPPGVGKT 232
+ G GVGKT
Sbjct: 83 LTGNNGVGKT 92
>UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subunit;
n=1; Mycoplasma synoviae 53|Rep: DNA polymerase III
gamma and tau subunit - Mycoplasma synoviae (strain 53)
Length = 609
Score = 41.9 bits (94), Expect = 0.016
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSAL 680
I SR + R+S+ QI+A++ I NKEN+S+ +E + + + G LR AL
Sbjct: 161 ILSRVQSFNFRRISEKQIVAQLENILNKENISFEKEALMLIAQLSSGGLRDAL 213
Score = 39.5 bits (88), Expect = 0.086
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KYRPQ F +I+G + + L V + A + AGP G GKT+T A+
Sbjct: 9 KYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAK 60
Score = 37.9 bits (84), Expect = 0.26
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVILDEADSMTDGAQQALRRTMEL 462
++E++A+++ G+D +RN +K Q LP ++KI I+DE ++ A AL +T+E
Sbjct: 85 IIEMDAASNTGVDEIRN-LKENVDQ---LPFESKYKIYIIDEVHMLSKSAFNALLKTLEE 140
Query: 463 YSSTTRFALAANNSER 510
S F LA + ++
Sbjct: 141 PPSYVIFILATTDVQK 156
>UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Campylobacter|Rep: DNA polymerase III gamma and tau
subunits - Campylobacter coli RM2228
Length = 518
Score = 41.9 bits (94), Expect = 0.016
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
++E++A+++RG++ ++ I+ Q K T R KI I+DE +T A AL +T+E
Sbjct: 89 IIEMDAASNRGLEDIQALIE---QTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEP 145
Query: 466 SSTTRFALAANN 501
S +F LA +
Sbjct: 146 PSYVKFILATTD 157
Score = 33.5 bits (73), Expect = 5.6
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN--APNIIIAGPPGVGKTTT 238
KYRP+TFD+++G + TVS +A N A + +G G GKT++
Sbjct: 8 KYRPKTFDELIG-QKTVSTSLKYALNHNRLAHAYLFSGLRGSGKTSS 53
>UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Acidobacteria bacterium Ellin345|Rep: DNA
polymerase III, subunits gamma and tau - Acidobacteria
bacterium (strain Ellin345)
Length = 632
Score = 41.9 bits (94), Expect = 0.016
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+ +RGID +R +++ A+ + R KI ILDEA +TD A AL +T+E
Sbjct: 92 VIEIDAATNRGIDEIR-ELREAARYRPARD--RFKIYILDEAHQITDAAFNALLKTLEEP 148
Query: 466 SSTTRFALAANNSE 507
F +A E
Sbjct: 149 PGHIVFMMATTEPE 162
Score = 33.9 bits (74), Expect = 4.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
KYRPQ F +++G + L + A I +G G+GKTT LA
Sbjct: 9 KYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILA 59
>UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Trichodesmium erythraeum IMS101|Rep: DNA
polymerase III, subunits gamma and tau - Trichodesmium
erythraeum (strain IMS101)
Length = 695
Score = 41.9 bits (94), Expect = 0.016
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
P KYRPQTF D+VG + L T AP + GP G GKT++ LA+
Sbjct: 5 PLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAK 60
Score = 35.5 bits (78), Expect = 1.4
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ G+D +R I+ V R+K+ ++DE ++ A AL +T+E
Sbjct: 92 VIEIDAASNTGVDNIRELIERSQFAPVQC---RYKVYVIDEVHMLSVSAFNALLKTLEEP 148
Query: 466 SSTTRFALAANNSER 510
F LA + +R
Sbjct: 149 PKGVVFILATTDPQR 163
>UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22;
Epsilonproteobacteria|Rep: ATPase, AAA family -
Sulfurovum sp. (strain NBC37-1)
Length = 393
Score = 41.9 bits (94), Expect = 0.016
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNA---PNIIIAGPPGVGKTTTILCLA 253
KYRP+T D++VG + A K A P+I + GPPG GKTT +A
Sbjct: 7 KYRPKTLDEMVGQRHLLGEEAPLRKLIEADALPHIFLYGPPGCGKTTLARIIA 59
>UniRef50_A5WC21 Cluster: AAA ATPase, central domain protein; n=3;
Psychrobacter|Rep: AAA ATPase, central domain protein -
Psychrobacter sp. PRwf-1
Length = 439
Score = 41.9 bits (94), Expect = 0.016
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 65 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAV---FAKTGNAPNIIIAGPPGVGKTT 235
P S+ ++P ++ RP+ D+++G ++ A F + G+ P++I+ G G+GKTT
Sbjct: 5 PHSALYPDIPLAQRLRPKRLDEVIGQTHLLAPGAPIQRFVEHGHLPSLILHGEAGIGKTT 64
Query: 236 TILCLA 253
+ LA
Sbjct: 65 IAMLLA 70
Score = 32.7 bits (71), Expect = 9.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 528 SRCAVLRYSRLSDAQILAKVIEICNKEN----LSYTEEGVSAVVFTAQGDLRSALNNLQS 695
SRC V R L D QI + +++ LS + + + AQGD R ALN L+
Sbjct: 157 SRCQVYRLQPLDDTQIGELLQRALSQDEFLSQLSIDLQALPQIANLAQGDARKALNLLEM 216
Query: 696 TAQGFGH 716
Q H
Sbjct: 217 AVQASDH 223
>UniRef50_A5DW03 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 839
Score = 41.9 bits (94), Expect = 0.016
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +2
Query: 47 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNA---PNIIIAGPP 217
+K++ + P + RP+T DD +G E V A A P+ ++ GPP
Sbjct: 167 DKQKEMAELKRRAAAPLAHRVRPKTLDDFIGQEKLVGENAPLRNLIQADLIPSFLLWGPP 226
Query: 218 GVGKTTTILCLAQLSSEY 271
G GKTT +A+ S++Y
Sbjct: 227 GCGKTTIARIIAK-STDY 243
>UniRef50_Q6XM61 Cluster: FirrV-1-A26; n=1; Feldmannia irregularis
virus a|Rep: FirrV-1-A26 - Feldmannia irregularis virus
a
Length = 306
Score = 41.5 bits (93), Expect = 0.021
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +2
Query: 50 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 229
+ + K S +L W ++ RP D+VG + V L + + G P +++ G PGVGK
Sbjct: 19 RSKTKIRFQSSASLLWADRIRPTCAADLVG--EGVETLVRWFRDGERP-LLLTGAPGVGK 75
Query: 230 TTTILCLAQ 256
TT + +A+
Sbjct: 76 TTAVRVVAE 84
>UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2;
cellular organisms|Rep: DNA polymerase III subunit gamma
- Propionibacterium acnes
Length = 957
Score = 41.5 bits (93), Expect = 0.021
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Frame = +2
Query: 65 PSSSKSTNLPWI-----EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGV 223
P S+ +LP + +YRP+TFD+++G ED V A N N + +GP G
Sbjct: 95 PDSNPDDDLPELPLALYRRYRPETFDEVIG-EDHVIEPLKRAILNNRVNHAYLFSGPRGC 153
Query: 224 GKTTTILCLAQLSSEYLSKTP 286
GKTTT LA+ + TP
Sbjct: 154 GKTTTARILARALNCEQGPTP 174
>UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Maricaulis maris MCS10|Rep: DNA polymerase
III, subunits gamma and tau - Maricaulis maris (strain
MCS10)
Length = 606
Score = 41.5 bits (93), Expect = 0.021
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KYRP TF+D++G + V L FA A ++ G GVGKTTT +A+
Sbjct: 38 KYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIAR 89
Score = 33.9 bits (74), Expect = 4.3
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIE-ICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QS 695
+ SRC R+ D ++L ++ IC E S +G+S + A+G +R AL+ L Q+
Sbjct: 199 VLSRCQRFDLKRI-DREVLTDHLDRICGLEGASVERDGLSLIARAAEGSVRDALSLLDQA 257
Query: 696 TAQGFGHISP 725
QG P
Sbjct: 258 IVQGSDEDGP 267
>UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Flavobacteriales|Rep: DNA polymerase III subunit
gamma/tau - Robiginitalea biformata HTCC2501
Length = 631
Score = 41.5 bits (93), Expect = 0.021
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNED-TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSSE 268
KYRPQ F+D+VG + T + L A ++ GP GVGKTT LA+ +E
Sbjct: 21 KYRPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKINE 76
Score = 39.5 bits (88), Expect = 0.086
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 265 GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQ 438
G F + EL+A+++ +D +RN I +V +PP G++K+ I+DE ++ A
Sbjct: 83 GEDFAFNIFELDAASNNSVDDIRNLI-----DQVRIPPQVGKYKVYIIDEVHMLSQAAFN 137
Query: 439 ALRRTMELYSSTTRFALAANNSER 510
A +T+E F LA +
Sbjct: 138 AFLKTLEEPPRHAIFILATTEKHK 161
>UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 355
Score = 41.5 bits (93), Expect = 0.021
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = +1
Query: 223 WKNDDYTMLSAALLGVSFKDAVLELNASNDRGID--VVRNKIKMFAQQKVTLPPGRH--K 390
WK D L + + E+N S+ D VV+ IK A+ + G K
Sbjct: 74 WKIDQNDRKIEVELAMMSSNHHCEMNPSDCGSKDRYVVQEVIKEMARSRPIDSDGCEGFK 133
Query: 391 IVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
+++L E D ++ AQ LRRTME YS++ R L A R
Sbjct: 134 VLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSR 173
Score = 34.3 bits (75), Expect = 3.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVG-NEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 244
W++K+RP + N L + G+ P++ GP G GK T L
Sbjct: 3 WVDKHRPHALGECDAINTAQAKHLKLLIANGDCPHLFFYGPSGAGKKTLAL 53
>UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 655
Score = 41.1 bits (92), Expect = 0.028
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
+P KYRP+ F ++VG E + L +T AP + GP G GKT++ LA+
Sbjct: 4 VPLHHKYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAK 60
Score = 36.7 bits (81), Expect = 0.61
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ G+D +R I+ V R+K+ ++DE ++ A AL +T+E
Sbjct: 92 VIEIDAASNTGVDNIRELIEKAQFAPVQC---RYKVYVIDECHMLSSAAFNALLKTLEEP 148
Query: 466 SSTTRFALAANNSER 510
F LA + +R
Sbjct: 149 PRHVVFVLATTDPQR 163
Score = 36.7 bits (81), Expect = 0.61
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
++ I SRC + R+ ++ + I +KEN++ + E V+ V +QG LR A + L
Sbjct: 164 VLPTIISRCQRFDFRRIQLEAMVKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLL 223
Query: 690 QSTAQGFGHISPDNVF 737
A ++P+ V+
Sbjct: 224 DQLALLPNEVTPEQVW 239
>UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Gloeobacter violaceus|Rep: DNA polymerase III gamma
and tau subunits - Gloeobacter violaceus
Length = 632
Score = 41.1 bits (92), Expect = 0.028
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQLSSE 268
P KYRPQ F D+VG V+ L K G A + G G GKTTT +A+ +
Sbjct: 5 PLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNC 64
Query: 269 YLSKTP 286
TP
Sbjct: 65 IHGPTP 70
Score = 36.3 bits (80), Expect = 0.80
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ G+D +R I+ V R K+ ILDE ++ A L +T+E
Sbjct: 90 VIEIDAASNTGVDNIRELIERAQFAPVQ---SRQKVYILDEVHMLSSAAFNCLLKTLEEP 146
Query: 466 SSTTRFALAANNSER 510
+ F LA + ++
Sbjct: 147 PAHVTFVLATTDPQK 161
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 41.1 bits (92), Expect = 0.028
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
+P+ KYRP+ F +++G E V L K A + AGP GVGKTT LA+
Sbjct: 4 VPFARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAK 60
Score = 39.9 bits (89), Expect = 0.065
Identities = 25/75 (33%), Positives = 42/75 (56%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
++E++A+++RGID VR +K K G++K+ I+DEA +T A AL +T+E
Sbjct: 90 LIEMDAASNRGIDDVR-ALKEAVNYKPI--KGKYKVYIIDEAHMLTKEAFNALLKTLEEP 146
Query: 466 SSTTRFALAANNSER 510
T F L ++
Sbjct: 147 PPRTVFVLCTTEYDK 161
Score = 37.5 bits (83), Expect = 0.35
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+I+ I SRC + +S++ +++ + +IC KE + E + + ++G +R A +
Sbjct: 161 KILPTILSRCQRIIFSKVRKEKVIEYLKKICEKEGIECEEGALEVLAHASEGCMRDAASL 220
Query: 687 L-QSTAQGFGHISPDNV 734
L Q++ G G ++ + V
Sbjct: 221 LDQASVYGEGRVTKEVV 237
>UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1;
Chlorobium phaeobacteroides BS1|Rep: DNA-directed DNA
polymerase - Chlorobium phaeobacteroides BS1
Length = 613
Score = 41.1 bits (92), Expect = 0.028
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
KYRP TF +VG + S L K + A + GP GVGKTT LA+
Sbjct: 10 KYRPMTFKQVVGQQSITSTLQNAIKNNHLAQAFLFTGPRGVGKTTCARILAK 61
Score = 37.9 bits (84), Expect = 0.26
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 292 ELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTMELY 465
EL+A+++ +D +R+ + ++V +PP G++K+ I+DE ++ A A +T+E
Sbjct: 94 ELDAASNNSVDDIRSLV-----EQVRIPPQVGKYKVYIIDEVHMLSQAAFNAFLKTLEEP 148
Query: 466 SSTTRFALAANNSER 510
+ +F LA +
Sbjct: 149 PAYAKFILATTEKHK 163
>UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Roseiflexus|Rep: DNA polymerase III, subunits
gamma and tau - Roseiflexus sp. RS-1
Length = 599
Score = 41.1 bits (92), Expect = 0.028
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+YR QTFD+++G E V L A+ A + GP GVGKTT LA+
Sbjct: 9 RYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAK 60
>UniRef50_A3LTW2 Cluster: Replication factor ATPase; n=1; Pichia
stipitis|Rep: Replication factor ATPase - Pichia
stipitis (Yeast)
Length = 786
Score = 41.1 bits (92), Expect = 0.028
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Frame = +2
Query: 65 PSSSKSTN------LPWIEKYRPQTFDDIVGNEDTVS----RLAVFAKTGNAPNIIIAGP 214
P+S+ S+N LP E RP++ D+ +G + + + F + P++++ GP
Sbjct: 7 PTSNTSSNALSILSLPLAEAIRPRSLDEYIGQKHLIDPDNGAITNFMRLRYLPSMLLYGP 66
Query: 215 PGVGKTTTILCLAQ 256
PGVGKTT +A+
Sbjct: 67 PGVGKTTMASIIAE 80
>UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subunits;
n=17; Bacilli|Rep: DNA polymerase III gamma and tau
subunits - Staphylococcus haemolyticus (strain JCSC1435)
Length = 571
Score = 40.7 bits (91), Expect = 0.037
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQALRRTME 459
V+E++A+++ G+D +RN + KV P ++K+ I+DE +T GA AL +T+E
Sbjct: 90 VIEIDAASNNGVDEIRN-----IRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLE 144
Query: 460 LYSSTTRFALAANNSER 510
+ F LA +
Sbjct: 145 EPPAHAIFILATTEPHK 161
Score = 35.5 bits (78), Expect = 1.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 107 YRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTT 235
+RPQ+F D+VG E L +K + I +GP G GKT+
Sbjct: 10 FRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTS 53
>UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau
subunit; n=1; Neorickettsia sennetsu str. Miyayama|Rep:
Putative DNA polymerase III, gamma/tau subunit -
Neorickettsia sennetsu (strain Miyayama)
Length = 396
Score = 40.7 bits (91), Expect = 0.037
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTT 238
KYRP+ D+IVG + V L A A+ A I+++GP G GKTTT
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTT 54
Score = 40.7 bits (91), Expect = 0.037
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
I SRC R SRLS I ++ ++ KE + T++ + + A G LR AL+ L+
Sbjct: 166 IISRCQHYRLSRLSRVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLE 222
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 40.7 bits (91), Expect = 0.037
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 74 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCL 250
SK ++ KYRP +F ++ G + V L + K + A + +GP GVGKTT +
Sbjct: 4 SKKMHITLYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLI 63
Query: 251 AQ 256
A+
Sbjct: 64 AK 65
Score = 39.5 bits (88), Expect = 0.086
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 453
F D ++E++A+++R ID +R+ + Q V G K+ I+DEA +T A AL +T
Sbjct: 93 FSD-LIEIDAASNRSIDEIRSLKEKINYQPVE---GLKKVYIIDEAHMLTKEAFNALLKT 148
Query: 454 MELYSSTTRFALAANNSER 510
+E + F LA E+
Sbjct: 149 LEEPPAHVMFILATTELEK 167
>UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and tau;
n=27; Bacteria|Rep: DNA polymerase III subunits gamma
and tau - Silicibacter sp. (strain TM1040)
Length = 608
Score = 40.7 bits (91), Expect = 0.037
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KYRP+TF D+VG + V L FA A I+ G G GKTTT +A+
Sbjct: 23 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAK 74
Score = 33.5 bits (73), Expect = 5.6
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A++ G+ +R I A + + R+KI I+DE ++ A AL +T+E
Sbjct: 109 VMEMDAASRTGVGDIREIIDSVAYRAAS---ARYKIYIIDEVHMLSTSAFNALLKTLEEP 165
Query: 466 SSTTRFALA 492
+ +F A
Sbjct: 166 PAHVKFIFA 174
>UniRef50_Q15RT3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Pseudoalteromonas atlantica T6c|Rep: DNA
polymerase III, subunits gamma and tau -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 914
Score = 40.7 bits (91), Expect = 0.037
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQST 698
I SRC LS AQI ++ + +E L E ++ + AQG +R AL+ + Q+
Sbjct: 166 ILSRCLQFNLKALSRAQIAQQLQHVFAQEQLQNAPEALAQIARAAQGSMRDALSLSDQAI 225
Query: 699 AQGFGHIS 722
AQG G++S
Sbjct: 226 AQGNGNVS 233
>UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep:
Protein EbsC - Campylobacter curvus 525.92
Length = 553
Score = 40.7 bits (91), Expect = 0.037
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
++E++A++ R ID +R I+ Q K R+KI I+DE +T A AL +T+E
Sbjct: 88 IIEMDAASHRKIDDIRELIE---QTKYKPAMARYKIFIIDEVHMLTKEAFNALLKTLEEP 144
Query: 466 SSTTRFALAANN 501
S +F LA +
Sbjct: 145 PSYVKFILATTD 156
>UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Sulfurovum sp. NBC37-1|Rep: DNA polymerase III,
gamma/tau subunits - Sulfurovum sp. (strain NBC37-1)
Length = 666
Score = 40.7 bits (91), Expect = 0.037
Identities = 23/72 (31%), Positives = 41/72 (56%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
++E++A+++RGID +++ I+ K R+KI I+DE +T A AL +T+E
Sbjct: 89 IIEMDAASNRGIDDIKDLIE---HTKYKPSSARYKIFIIDEVHMLTTQAFNALLKTLEEP 145
Query: 466 SSTTRFALAANN 501
+F LA +
Sbjct: 146 PDFVKFILATTD 157
Score = 39.5 bits (88), Expect = 0.086
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APNIIIAGPPGVGKTTTILCLAQ 256
+L KYRP TFDD++G +D+VS+ A GN + + +G G GKT+T A+
Sbjct: 2 SLALARKYRPATFDDLIG-QDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAK 59
>UniRef50_A5V6U8 Cluster: AAA ATPase, central domain protein; n=1;
Sphingomonas wittichii RW1|Rep: AAA ATPase, central
domain protein - Sphingomonas wittichii RW1
Length = 444
Score = 40.7 bits (91), Expect = 0.037
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNA---PNIIIAGPPGVGKTTTILCLAQL 259
P E+ RP +D+VG E A A+ A +II GPPG+GKTT LA L
Sbjct: 22 PLAERLRPTRIEDVVGQEHLTGPDAPLARMVAARRLSSIIFWGPPGIGKTTLARLLADL 80
>UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Sphingomonas wittichii RW1|Rep: DNA polymerase
III, subunits gamma and tau - Sphingomonas wittichii RW1
Length = 582
Score = 40.7 bits (91), Expect = 0.037
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
KYRPQ F++++G + V+ LA + G A ++ G GVGKT+T +A+
Sbjct: 14 KYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAK 65
Score = 33.1 bits (72), Expect = 7.5
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A++ ID VR I+ V+ R+KI I+DE ++ A L +T+E
Sbjct: 100 VVEMDAASHTSIDDVREIIEAVRYASVS---ARYKIYIIDEVHMLSKSAFNGLLKTLEEP 156
Query: 466 SSTTRFALA 492
+ +F A
Sbjct: 157 PAHVKFLFA 165
>UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Microscilla marina ATCC 23134|Rep: DNA polymerase III
subunit gamma/tau - Microscilla marina ATCC 23134
Length = 575
Score = 40.7 bits (91), Expect = 0.037
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLAQ 256
KYRP TFD +VG + L K+ A + GP GVGKTT LA+
Sbjct: 10 KYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAK 61
Score = 35.9 bits (79), Expect = 1.1
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTME 459
V EL+A++ +D +RN + +V PP G+ K+ I+DE +++ A A +T+E
Sbjct: 92 VYELDAASSNSVDDIRNLV-----DQVRYPPQSGKRKVYIIDEVHMLSNSAFNAFLKTLE 146
Query: 460 LYSSTTRFALAANNSER 510
F LA +
Sbjct: 147 EPPEYVIFILATTEKHK 163
>UniRef50_Q75DK2 Cluster: ABR019Cp; n=1; Eremothecium gossypii|Rep:
ABR019Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 730
Score = 40.7 bits (91), Expect = 0.037
Identities = 19/71 (26%), Positives = 39/71 (54%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+E ++ C ++ + + +L ++ +C KE + ++ + + +QGD+R+ALNNLQ
Sbjct: 310 LEDLRPHCQIVAFRPPGELALLERLELVCEKEGVPADKKTLKQMAELSQGDIRNALNNLQ 369
Query: 693 STAQGFGHISP 725
+ G SP
Sbjct: 370 FMSVTDGTGSP 380
>UniRef50_Q0UVB4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 852
Score = 40.7 bits (91), Expect = 0.037
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLA-----VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
PW EKY P + +++ ++ VS + VF+ G +++ GP G GKTTT+ LA+
Sbjct: 194 PWTEKYGPASLEELAVHKKKVSDVRTWLEDVFSGRGRKRLLLLKGPAGSGKTTTMSLLAK 253
>UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;
Tetrahymena thermophila SB210|Rep: ATPase, AAA family
protein - Tetrahymena thermophila SB210
Length = 1242
Score = 40.3 bits (90), Expect = 0.049
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Frame = +2
Query: 62 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRL---------AVFAKT---GN------ 187
K + S + W KY PQ +D VGNE + +L V K GN
Sbjct: 631 KQNQENSIHSLWTHKYAPQELNDCVGNEAQIKKLENWLVNWENVVVHKQKVQGNWKENPG 690
Query: 188 APNIIIAGPPGVGKTTTILCLAQ 256
+ +I+GPPG+GKT+T+ LAQ
Sbjct: 691 SRACLISGPPGIGKTSTVRLLAQ 713
Score = 38.3 bits (85), Expect = 0.20
Identities = 21/81 (25%), Positives = 40/81 (49%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ + + + + S C +R+ + + QI +++E+C KE L + + +
Sbjct: 790 FCVCNDRYSQKLRSLASICFDVRFYKPNKGQIAKRLLEVCRKEGLKSELNHLEFLAESVN 849
Query: 660 GDLRSALNNLQSTAQGFGHIS 722
D+R ALN LQ ++ IS
Sbjct: 850 NDIRQALNLLQMQSKKSKDIS 870
>UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Cyanobacteria|Rep: DNA polymerase III gamma and tau
subunits - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 603
Score = 40.3 bits (90), Expect = 0.049
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
P KYRPQ F D+VG + L K AP + GP G GKT++ LA+
Sbjct: 5 PLHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAK 60
Score = 34.7 bits (76), Expect = 2.4
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A++ G+D +R I+ V R+K+ ++DE ++ A AL +T+E
Sbjct: 92 VIEIDAASHTGVDNIRELIEKAQFAPVQC---RYKVYVIDECHMLSVSAFNALLKTLEEP 148
Query: 466 SSTTRFALAANNSER 510
F LA + +R
Sbjct: 149 PPQVVFILATTDPQR 163
>UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau;
n=1; Chromobacterium violaceum|Rep: DNA polymerase
subunits gamma and tau - Chromobacterium violaceum
Length = 639
Score = 40.3 bits (90), Expect = 0.049
Identities = 23/75 (30%), Positives = 44/75 (58%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
+LE++A+++ GID +R ++ AQ T+ GR K+ I+DE ++ A A+ +T+E
Sbjct: 90 LLEIDAASNTGIDNIREVLEN-AQYAPTM--GRFKVYIIDEVHMLSKSAFNAMLKTLEEP 146
Query: 466 SSTTRFALAANNSER 510
+F LA + ++
Sbjct: 147 PGHVKFILATTDPQK 161
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
K+RP+ F D+VG E V L+ K + ++ G GVGKTT LA+
Sbjct: 9 KWRPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAK 60
>UniRef50_Q7M7T5 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND TAU;
n=4; Epsilonproteobacteria|Rep: DNA POLYMERASE III
SUBUNITS GAMMA AND TAU - Wolinella succinogenes
Length = 544
Score = 40.3 bits (90), Expect = 0.049
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
++E++A++ R ID +R+ I+ Q K GR KI I+DE +T A AL +T+E
Sbjct: 89 IIEMDAASSRKIDDIRDLIE---QTKYHPAMGRFKIFIIDEVHMLTKEAFNALLKTLEEP 145
Query: 466 SSTTRFALAANN 501
+F LA +
Sbjct: 146 PPYVKFILATTD 157
>UniRef50_Q67J53 Cluster: Lon-like ATP-dependent protease; n=14;
Firmicutes|Rep: Lon-like ATP-dependent protease -
Symbiobacterium thermophilum
Length = 659
Score = 40.3 bits (90), Expect = 0.049
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 77 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KS + E RP+ +++VG + + L + ++I+ GPPGVGK TT+ L
Sbjct: 173 KSLHRSAAELLRPRALEEVVGQDRAIQALLAKVASPFPQHVILYGPPGVGK-TTVARLVL 231
Query: 257 LSSEYLSKTPY 289
++ + TP+
Sbjct: 232 EKAKTMPHTPF 242
>UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2;
Anaplasma|Rep: DNA polymerase III gamma subunit -
Anaplasma marginale (strain St. Maries)
Length = 474
Score = 40.3 bits (90), Expect = 0.049
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTA 701
+ SRC L +L+ Q+ A ++EI KE++ + +G+ + A G +R+AL L+ +A
Sbjct: 163 VASRCHRLDLFKLTTDQLFAHLVEIAKKEDIEHDGDGLRLIAENASGSVRNALFLLEQSA 222
Score = 38.3 bits (85), Expect = 0.20
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTT 235
KYRP++FDD+VG + V L G+ + I++ G GVGKTT
Sbjct: 6 KYRPRSFDDLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTT 50
Score = 35.9 bits (79), Expect = 1.1
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG-RHKIVILDEADSMTDGAQQALRRTMEL 462
V+E++A+++ G+D +R + + LP R+K+ I+DE ++ A AL +T+E
Sbjct: 87 VIEMDAASNTGVDDIR----VLLENSSYLPTSSRYKVYIIDEVHMLSISAFNALLKTLED 142
Query: 463 YSSTTRFALA 492
+ RF +A
Sbjct: 143 PAEHVRFVMA 152
>UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Clostridiales|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium phytofermentans
ISDg
Length = 522
Score = 40.3 bits (90), Expect = 0.049
Identities = 22/69 (31%), Positives = 41/69 (59%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ G+D +R ++ + K + G +K+ I+DE ++ GA AL +T+E
Sbjct: 90 VIEIDAASNNGVDNIREIVE---EVKYSPTEGNYKVYIIDEVHMLSAGAFNALLKTLEEP 146
Query: 466 SSTTRFALA 492
S F LA
Sbjct: 147 PSYVIFILA 155
Score = 33.1 bits (72), Expect = 7.5
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
K+RP TF+D+ G + V+ L K + + G G GKTT LA+
Sbjct: 9 KFRPDTFEDVKGQDHIVTTLKNQIKAKRIGHAYLFCGTRGTGKTTVAKILAK 60
>UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;
n=2; Peptococcaceae|Rep: DNA polymerase III, gamma/tau
subunits - Pelotomaculum thermopropionicum SI
Length = 558
Score = 40.3 bits (90), Expect = 0.049
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQQALRRTME 459
V+E++A+++RGID +R+ ++K+ P GR+++ I+DE +T A AL +T+E
Sbjct: 90 VIEIDAASNRGIDEIRD-----LREKIRFAPAAGRYRVYIIDEVHMLTSEAFNALLKTLE 144
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 83 TNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQ 256
T L ++RP+TF +I+G E L + G + I G G GKTT LA+
Sbjct: 2 TYLALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAK 60
>UniRef50_A3YHQ6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Marinomonas sp. MED121|Rep: DNA polymerase III
subunits gamma and tau - Marinomonas sp. MED121
Length = 823
Score = 40.3 bits (90), Expect = 0.049
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALN-NLQST 698
I SRC +S +++ + ++ E LSY E G+ + A G +R AL+ Q+
Sbjct: 167 ILSRCLQFNLKNMSPGRVVNYLEKVLTTEQLSYDEAGLWQIGQAANGSMRDALSLTDQAI 226
Query: 699 AQGFGHISPDNV 734
A G GHIS +V
Sbjct: 227 AFGNGHISETDV 238
>UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;
n=5; Prochlorococcus marinus|Rep: DNA polymerase, gamma
and tau subunits - Prochlorococcus marinus (strain MIT
9515)
Length = 595
Score = 40.3 bits (90), Expect = 0.049
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSA 677
+I IQSRC + R+S I + EI NKE++ + ++ + + + G +R A
Sbjct: 166 VINTIQSRCQKFDFKRISSNTIFHNLSEIANKESIKFEDQALKLIAKRSNGGMRDA 221
Score = 36.3 bits (80), Expect = 0.80
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNE--DTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
P+ +KYRP D++VG E + A+ +K AP + GP G GKT++ A+
Sbjct: 7 PFHQKYRPSNLDELVGQEFISITLKQALISKK-IAPAYLFNGPRGTGKTSSARIFAK 62
>UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; cellular organisms|Rep: DNA polymerase III,
subunits gamma and tau - Acidovorax sp. (strain JS42)
Length = 679
Score = 40.3 bits (90), Expect = 0.049
Identities = 21/73 (28%), Positives = 42/73 (57%)
Frame = +1
Query: 292 ELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSS 471
EL+A+++RG+D V+ ++ + V GR K+ ++DE +T+ A A+ +T+E
Sbjct: 97 ELDAASNRGVDEVQGLLEQAVYKPVQ---GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPE 153
Query: 472 TTRFALAANNSER 510
+F LA + ++
Sbjct: 154 YLKFVLATTDPQK 166
Score = 35.5 bits (78), Expect = 1.4
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KYRP+TF ++VG E V L+ + + G GVGKTT LA+
Sbjct: 9 KYRPKTFSEMVGQEHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60
>UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Magnetococcus sp. MC-1|Rep: DNA polymerase
III, subunits gamma and tau - Magnetococcus sp. (strain
MC-1)
Length = 605
Score = 40.3 bits (90), Expect = 0.049
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLA 253
K+RP+ F+D++G E TV L + G P+ + G G+GKTT LA
Sbjct: 13 KWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLA 63
Score = 39.5 bits (88), Expect = 0.086
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+I+ I SRC RL + + + + E ++Y +EG++A+ A G +R AL+
Sbjct: 165 KILPTILSRCQRYDLRRLDRDGLARYLAHVLDVEQIAYDQEGLAAISHAADGSVRDALSL 224
Query: 687 L-QSTAQGFGHISPDNV 734
L Q+ A G G + +V
Sbjct: 225 LDQAIAHGGGRVDYTHV 241
>UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;
n=1; Tetrahymena thermophila SB210|Rep: Replication
factor C subunit, putative - Tetrahymena thermophila
SB210
Length = 358
Score = 40.3 bits (90), Expect = 0.049
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +1
Query: 382 RHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
R K++I++E D +T AQ +LRRTME Y R L A N R
Sbjct: 131 RFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGR 173
Score = 35.5 bits (78), Expect = 1.4
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
W+++ RP++ D + + +L A + + P++++ GP G GK T + Q
Sbjct: 5 WVDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMAFLQ 58
>UniRef50_Q5KCB2 Cluster: Sister chromatid cohesion-related protein,
putative; n=2; Filobasidiella neoformans|Rep: Sister
chromatid cohesion-related protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 892
Score = 40.3 bits (90), Expect = 0.049
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+ P++S ++R+ + ++ ++ +IC +E L ++ +V GD+RS LN LQ
Sbjct: 456 LRPLRSYARIIRFRKPQAQSLVVRLRDICKREGLQSDTRSLNTLVEMTSGDVRSCLNTLQ 515
Score = 32.7 bits (71), Expect = 9.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTL-PPGRHKIVILDEADSMTDGAQQALRRTMEL 462
+LE+NAS+DR V+ +I+ +L G+ V++DE D G ++ ++L
Sbjct: 364 ILEINASDDRSYQTVQTRIRNAVDAGTSLGAEGKPTCVVIDEIDGAGGGESGFIKALIKL 423
>UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4;
Thermotogaceae|Rep: UPF0189 protein TM_0508 - Thermotoga
maritima
Length = 599
Score = 40.3 bits (90), Expect = 0.049
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
I+ + SRC +L + +LSD ++ + + N+ E A+V ++GD R LN L
Sbjct: 141 IVPALLSRCRILYFKKLSDEDLMKILKKATEVLNIDLEESVEKAIVRHSEGDARKLLNTL 200
Query: 690 QSTAQGF 710
+ Q F
Sbjct: 201 EIVHQAF 207
Score = 39.9 bits (89), Expect = 0.065
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPNIIIAGPPGVGKTTTILCLAQ-L 259
P E RP+ F+D VG + + KTGN + I+ GPPG GKT+ L +
Sbjct: 7 PLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILYGPPGSGKTSVFSLLKRYF 66
Query: 260 SSE--YLSKT 283
+ E YLS T
Sbjct: 67 NGEVVYLSST 76
>UniRef50_Q6FYP6 Cluster: Holliday junction ATP-dependent DNA
helicase ruvB; n=305; root|Rep: Holliday junction
ATP-dependent DNA helicase ruvB - Bartonella quintana
(Rochalimaea quintana)
Length = 361
Score = 40.3 bits (90), Expect = 0.049
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +2
Query: 110 RPQTFDDIVGNEDTVSRLAVFAKTGNA-----PNIIIAGPPGVGKTTTILCLAQ 256
RPQ DD +G E + L +F + A +++ GPPG+GKTT +A+
Sbjct: 21 RPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAK 74
>UniRef50_UPI0000DAE674 Cluster: hypothetical protein
Rgryl_01000912; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000912 - Rickettsiella
grylli
Length = 523
Score = 39.9 bits (89), Expect = 0.065
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQLSSEYLSK 280
KYRPQ+FD+++G E T L +T + + G GVGKTT LA+ +
Sbjct: 9 KYRPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLARLLAKCLNCQTQI 68
Query: 281 TP 286
TP
Sbjct: 69 TP 70
>UniRef50_Q74BH4 Cluster: ATPase, AAA family; n=2;
Deltaproteobacteria|Rep: ATPase, AAA family - Geobacter
sulfurreducens
Length = 440
Score = 39.9 bits (89), Expect = 0.065
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
N P E+ RP+T D+ VG E + L ++ ++I GPPG GKTT +A
Sbjct: 15 NAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIAN 74
Query: 257 LSSEY 271
+ +
Sbjct: 75 ATKSH 79
>UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits;
n=5; Mycoplasma hyopneumoniae|Rep: DNA polymerase III
gamma-tau subunits - Mycoplasma hyopneumoniae (strain
232)
Length = 726
Score = 39.9 bits (89), Expect = 0.065
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTT 235
+ + KYRP+ F DIVG + + L K+GN + + +GP G GKTT
Sbjct: 13 IAFYRKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTT 62
>UniRef50_Q47XQ9 Cluster: DNA polymerase III, gamma/tau subunit;
n=1; Colwellia psychrerythraea 34H|Rep: DNA polymerase
III, gamma/tau subunit - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 715
Score = 39.9 bits (89), Expect = 0.065
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL-QST 698
+ SRC L+ QI K+ EI + E +S+ + ++ + A+G +R +L+ Q+
Sbjct: 166 VLSRCLQFHLKALTVKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAI 225
Query: 699 AQGFGHISPDNV 734
AQG GHI+ N+
Sbjct: 226 AQGQGHINLTNI 237
>UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, gamma/tau
subunits - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 511
Score = 39.9 bits (89), Expect = 0.065
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
K+RP+TF +IVG E V L A A + +GP G GKTTT LA+
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAK 59
Score = 39.5 bits (88), Expect = 0.086
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V E++A+++RGID +R ++ K+ G++K+ I+DE +T+ A AL +T+E
Sbjct: 89 VFEIDAASNRGIDEIR---ELRESIKLVPAQGKYKVYIIDEVHMLTNEAFNALLKTLEEP 145
Query: 466 SSTTRFALA 492
F LA
Sbjct: 146 PEHVIFILA 154
>UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit of
the holliday junction resolvase; n=8; Bacteria|Rep:
ATPase related to the helicase subunit of the holliday
junction resolvase - Flavobacteria bacterium BBFL7
Length = 431
Score = 39.9 bits (89), Expect = 0.065
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 86 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPNIIIAGPPGVGKTTTILCLAQ 256
N P E+ RPQ + + V + G P++I+ GPPG GKTT +AQ
Sbjct: 3 NSPLAERIRPQNLSEYLSQNHLVGERGTLRQHILNGTIPSLILWGPPGTGKTTLANIIAQ 62
Query: 257 LS 262
S
Sbjct: 63 ES 64
>UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; Sphingomonadales|Rep: DNA polymerase III,
subunits gamma and tau - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 565
Score = 39.9 bits (89), Expect = 0.065
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 65 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTI 241
P++S KYRPQTF +++G + V L A+ A ++ G GVGKT+T
Sbjct: 22 PAASSGPYRVLARKYRPQTFAELIGQDAMVKTLGNAIARDRLAHAFLMTGVRGVGKTSTA 81
Query: 242 LCLAQ 256
+A+
Sbjct: 82 RLIAK 86
Score = 36.3 bits (80), Expect = 0.80
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ G+D VR I+ V+ R+KI I+DE ++ A AL +T+E
Sbjct: 121 VIEMDAASNTGVDDVREIIEAVRYAAVS---ARYKIYIIDEVHMLSRNAFNALLKTLEEP 177
Query: 466 SSTTRFALA 492
+F A
Sbjct: 178 PPHVKFLFA 186
>UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subunit;
n=3; Thermus thermophilus|Rep: DNA polymerase III
holoenzyme tau subunit - Thermus thermophilus
Length = 529
Score = 39.9 bits (89), Expect = 0.065
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLA 253
++RP TF ++VG E L + G A + +GP GVGKTTT LA
Sbjct: 7 RFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLA 57
Score = 32.7 bits (71), Expect = 9.9
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++A+++ ++ VR + ++ P K+ ILDEA ++ A AL +T+E
Sbjct: 86 VVEIDAASNNSVEDVRELRERIHLAPLSAP---RKVFILDEAHMLSKSAFNALLKTLEEP 142
Query: 466 SSTTRFALAANNSER 510
F A ER
Sbjct: 143 PPHVLFVFATTEPER 157
>UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Kineococcus radiotolerans SRS30216|Rep: DNA
polymerase III, subunits gamma and tau - Kineococcus
radiotolerans SRS30216
Length = 712
Score = 39.9 bits (89), Expect = 0.065
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAQLSSEYLSK 280
+YRP+TF+ ++G E + L G + + +GP G GKTT+ LA+ +
Sbjct: 8 RYRPETFEQVIGQEHVTAPLMQALSKGRVTHAYLFSGPRGCGKTTSARILARCLNCAQGP 67
Query: 281 TP 286
TP
Sbjct: 68 TP 69
>UniRef50_A6G1D5 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 361
Score = 39.9 bits (89), Expect = 0.065
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Frame = +2
Query: 110 RPQTFDDIVGNEDTVSRLAVF---AKTGNAP--NIIIAGPPGVGKTT 235
RP++FD+ VG +++L V+ AK + P ++++ GPPG+GKTT
Sbjct: 31 RPRSFDEYVGQRALITKLRVYVQAAKQRDEPLDHVLLHGPPGLGKTT 77
>UniRef50_A4M640 Cluster: AAA ATPase, central domain protein; n=1;
Petrotoga mobilis SJ95|Rep: AAA ATPase, central domain
protein - Petrotoga mobilis SJ95
Length = 411
Score = 39.9 bits (89), Expect = 0.065
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 92 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSSEY 271
P E RP+ D+++GNE L + K + II G PG GK+T + L +Y
Sbjct: 6 PLYEIIRPKKVDEVLGNEKLKEILKTWIKNKKVRSFIIYGEPGSGKSTIVRALINEIKDY 65
>UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n=3;
Ostreococcus|Rep: Replication factor C 110 kDa subunit -
Ostreococcus tauri
Length = 553
Score = 39.9 bits (89), Expect = 0.065
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLA------------VFAKTGNAPNIIIAGPPGVGKTTT 238
W +++ P+T D+VGN ++ L V K + I+I+GPPGVGKTTT
Sbjct: 66 WTDEFSPRTVTDLVGNSSAINVLRSWLLQWSARKFNVQLKGQDRKCILISGPPGVGKTTT 125
Query: 239 ILCLAQ 256
+ L +
Sbjct: 126 AVLLCK 131
>UniRef50_Q4MZF5 Cluster: Replication factor C large subunit,
putative; n=1; Theileria parva|Rep: Replication factor C
large subunit, putative - Theileria parva
Length = 1084
Score = 39.9 bits (89), Expect = 0.065
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +2
Query: 101 EKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNI---IIAGPPGVGKTTTILCLAQ 256
EKYRP+ F +++GN ++ R L F K +++GPPG+GKTT + Q
Sbjct: 504 EKYRPKRFSELIGNPRSIQRLKDWLQHFPKDKGKDEFKAALLSGPPGIGKTTCAKLVGQ 562
Score = 33.9 bits (74), Expect = 4.3
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 522 IQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+ ++C LR++ + ++ +IC EN+ TE + + + GDLR LN LQ
Sbjct: 673 LSNKCLDLRFNPPPIDLYINRINKICKLENIKVTENLLLELYHKSSGDLRYTLNYLQ 729
>UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 356
Score = 39.9 bits (89), Expect = 0.065
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+II PI+SRC ++R Q+ + +I + N +++ ++ + + G+LR A+
Sbjct: 174 KIINPIRSRCLLIRVPAPDQTQVAQILDKISAQYNCKISQQLINKIAIASNGNLREAILY 233
Query: 687 LQST 698
LQST
Sbjct: 234 LQST 237
Score = 38.7 bits (86), Expect = 0.15
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER**NP 522
K+VI++E D++T AQ +LRRTME Y R L + + NP
Sbjct: 134 KVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINP 178
>UniRef50_Q6CV97 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 763
Score = 39.9 bits (89), Expect = 0.065
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+E ++ ++ + + S+ ++ ++ +C KE + ++ + + +QGD+R++LNNLQ
Sbjct: 319 LEKLRPHSEIIHFQKPSENALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQ 378
Query: 693 -STAQGF 710
T GF
Sbjct: 379 FMTKNGF 385
>UniRef50_Q8KC00 Cluster: Holliday junction ATP-dependent DNA
helicase ruvB; n=16; Bacteria|Rep: Holliday junction
ATP-dependent DNA helicase ruvB - Chlorobium tepidum
Length = 344
Score = 39.9 bits (89), Expect = 0.065
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +2
Query: 80 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFA----KTGNA-PNIIIAGPPGVGKTT 235
+T + E+ RPQ D G + + L VF K G A +++++GPPG+GKTT
Sbjct: 12 ATEARFEEQIRPQKMGDFAGQKKLIDNLKVFITAARKRGEALDHVLLSGPPGLGKTT 68
>UniRef50_A0EHK8 Cluster: Chromosome undetermined scaffold_97, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_97,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 972
Score = 29.5 bits (63), Expect(2) = 0.067
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 50 KKQVKPSS-SKSTNLPWIEKYRPQTFDDIVGNEDTVSRL 163
KKQ +P + + NL +KY P+ D+V N+ +V++L
Sbjct: 383 KKQDQPENVNLDKNLSLADKYMPKLLSDLVDNKSSVTQL 421
Score = 29.5 bits (63), Expect(2) = 0.067
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 158 RLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLAQ 256
++ F GN + II+GPPG+GKT+ + +A+
Sbjct: 449 KMGRFQPVGNITSKACIISGPPGIGKTSMVRLVAE 483
>UniRef50_A7TRM5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 757
Score = 32.7 bits (71), Expect(2) = 0.068
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 71 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRL 163
+S S N W+EK++P F +VGNE T R+
Sbjct: 96 TSISDNSLWVEKWKPTKFIHLVGNEHTNRRI 126
Score = 26.2 bits (55), Expect(2) = 0.068
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 170 FAKTGNAPNIIIAGPPGVGKTT 235
F + N ++I GPPG+GKT+
Sbjct: 165 FFQRPNKKILLIHGPPGIGKTS 186
>UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subunits;
n=2; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 429
Score = 39.5 bits (88), Expect = 0.086
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
KYRPQ +++G E V L A AP + +GP G GKT+T +A+
Sbjct: 8 KYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAK 59
Score = 33.5 bits (73), Expect = 5.6
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTME 459
V EL+A+++ G++++R I V R KI I+DE +++ + QAL +T+E
Sbjct: 91 VTELDAASNSGVELIRELISTTQFAPVE---SRFKIFIIDECHALSSQSWQALLKTIE 145
>UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Pirellula sp.|Rep: DNA polymerase III gamma and tau
subunits - Rhodopirellula baltica
Length = 676
Score = 39.5 bits (88), Expect = 0.086
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
V+E++ +++RGID +R+ + A V R+KI I+DE +T A AL +T+E
Sbjct: 124 VIEIDGASNRGIDEIRS---LRANVGVRPSRSRYKIYIIDEVHMLTGAAFNALLKTLEEP 180
Query: 466 SSTTRFALAANNSER 510
+F + E+
Sbjct: 181 PEHVKFIFCTTDPEK 195
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,779,250
Number of Sequences: 1657284
Number of extensions: 14165933
Number of successful extensions: 52877
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 49635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52589
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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