Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30426
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 141 1e-34
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 85 8e-18
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 77 4e-15
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 45 1e-05
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 38 0.002
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 35 0.014
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 34 0.019
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 32 0.100
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 32 0.100
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.40
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 30 0.40
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.70
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 29 0.93
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.6
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 28 1.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 2.8
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 3.8
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 3.8
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 27 3.8
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 26 5.0
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 26 5.0
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 6.6
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 6.6
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 6.6
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 26 6.6
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 6.6
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 26 6.6
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.7
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 8.7
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 25 8.7
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 8.7
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 8.7
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 141 bits (341), Expect = 1e-34
Identities = 68/95 (71%), Positives = 80/95 (84%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L+ ALLG ++K+ VLELNAS++RGIDVVRN+IK FAQ+KV LPPGRHKI+ILD
Sbjct: 67 KTTSILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILD 126
Query: 406 EADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
EADSMT GAQQALRRTME+YS+TTRFALA N S +
Sbjct: 127 EADSMTAGAQQALRRTMEIYSNTTRFALACNQSNK 161
Score = 109 bits (262), Expect = 4e-25
Identities = 45/79 (56%), Positives = 67/79 (84%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRCA+LRYSRL+D Q+L +++ IC E ++YT++G++A++ TA+GD+R A+NN
Sbjct: 161 KIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNN 220
Query: 687 LQSTAQGFGHISPDNVFKV 743
LQST GFG ++ +NVF+V
Sbjct: 221 LQSTVAGFGLVNGENVFRV 239
Score = 91.5 bits (217), Expect = 1e-19
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +2
Query: 68 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 247
++S + LPW+EKYRP DDIVGNE+T+ RL V AK GN P+++I+G PG+GKTT+ILC
Sbjct: 14 NNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILC 73
Query: 248 LA 253
LA
Sbjct: 74 LA 75
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 85.4 bits (202), Expect = 8e-18
Identities = 51/101 (50%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSF-KDAVLELNASNDRGIDVVRNKIKMFAQQKVT-----LPPGRH 387
K LS L G K VLELNAS++RGI ++R K+K FA+ VT P
Sbjct: 65 KTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPF 124
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
KI+ILDEADSMT AQ ALRRTME Y+ TRF L N R
Sbjct: 125 KIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTR 165
Score = 62.1 bits (144), Expect = 8e-11
Identities = 28/71 (39%), Positives = 42/71 (59%)
Frame = +2
Query: 44 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGV 223
P K+ + + KS +PW+E YRP+T D + E TV L + N P+++ G PG
Sbjct: 6 PRNKKTEQEAKKS--IPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGT 63
Query: 224 GKTTTILCLAQ 256
GKT+TIL L++
Sbjct: 64 GKTSTILALSR 74
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ II+P+ SRC+ R+ L + ++ ++ I + +S V+A+V +
Sbjct: 156 FCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSG 215
Query: 660 GDLRSALNNLQSTA 701
GD+R A+ LQS A
Sbjct: 216 GDMRKAITFLQSAA 229
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 76.6 bits (180), Expect = 4e-15
Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +1
Query: 241 TMLSAA--LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEAD 414
T+L+ A + G ++++ ++ELNAS+DRGID VR +IK FA + K++ILDEAD
Sbjct: 72 TILACARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFA-STFKMIILDEAD 130
Query: 415 SMTDGAQQALRRTMELYSSTTRFALAAN 498
+MT AQ ALRR +E Y+ RF + N
Sbjct: 131 AMTLAAQNALRRVIEKYTKNVRFCIICN 158
Score = 70.5 bits (165), Expect = 2e-13
Identities = 30/64 (46%), Positives = 43/64 (67%)
Frame = +2
Query: 65 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 244
P S+ST LPW+EKYRP +D+V ++D +S L F + P+++ GPPG GKT+TIL
Sbjct: 16 PLGSEST-LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTIL 74
Query: 245 CLAQ 256
A+
Sbjct: 75 ACAR 78
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI +I IQSRC R+ L +I V + E+ + + AV+ ++
Sbjct: 153 FCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSK 212
Query: 660 GDLRSALNNLQSTAQGFGHISPDNVF 737
GD+R ALN LQ+ + HI ++
Sbjct: 213 GDMRKALNILQACHAAYDHIDVSAIY 238
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +1
Query: 388 KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
K+V+++ AD +T AQ ALRRTME YS+ R L AN++ +
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSK 169
Score = 42.3 bits (95), Expect = 7e-05
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
W+++YRP+T + ++ RL + T P++++ GP G GK T ++ +
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAI 54
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPI+SR ++R + + +I+ + +I + L + ++ + +LR A+
Sbjct: 169 KIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILL 228
Query: 687 LQS 695
L++
Sbjct: 229 LET 231
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLAQ 256
W EKY PQ D+ ++ +S + + T + + ++I GP G GK+T + LA+
Sbjct: 72 WFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAK 127
Score = 29.5 bits (63), Expect = 0.53
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 531 RCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAV---VFTAQGDLRSALNNLQ-ST 698
R VL+++ ++ + + I KE + + + +S V ++GDLRSA+N+LQ S
Sbjct: 266 RVTVLQFNPIAPTYMKKCLGSILRKEGVPKSPKLLSLVENICSASEGDLRSAINSLQLSI 325
Query: 699 AQGFGHISPDNVFKV 743
+Q F N+ +V
Sbjct: 326 SQSFEKKGTKNIREV 340
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 34.7 bits (76), Expect = 0.014
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 17/72 (23%)
Frame = +2
Query: 95 WIEKYRPQTFDDIVGNEDTVSRLAVFAK--------TGNAPN---------IIIAGPPGV 223
W KY P + DI GN+ V +L + + N P ++++GPPG+
Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420
Query: 224 GKTTTILCLAQL 259
GKTT +A+L
Sbjct: 421 GKTTAAHLVAKL 432
Score = 32.3 bits (70), Expect = 0.076
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+ P+ LR+ R + ++++ I +E L + + V +V Q D+R +N L
Sbjct: 526 LRPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLLS 585
Query: 693 STAQGFGHISPDN 731
+ ++P N
Sbjct: 586 TYKLSCSEMTPQN 598
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 34.3 bits (75), Expect = 0.019
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELY 465
VLE+NAS+DR V K+ L + VI+DE D +AL +E
Sbjct: 444 VLEINASDDRTAHTVHEKVSSAISNHSAL-SSQPTCVIVDEIDGGDPAFVRALLSLLESD 502
Query: 466 SSTTRFALAANNSER 510
T ++ A N+ ++
Sbjct: 503 EKATEYSQAGNSKKK 517
Score = 31.9 bits (69), Expect = 0.100
Identities = 12/60 (20%), Positives = 30/60 (50%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
+ P++ ++ + A ++ ++ IC EN++ ++ + D+RS +N+LQ
Sbjct: 539 LRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLTLLTDIYNSDIRSCINSLQ 598
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 62 KPSSSKSTNLPWIEKYRPQTFDDIVGNE 145
KP S K W++ YRPQ F D++G+E
Sbjct: 346 KPQSQKL----WVDTYRPQLFRDLLGDE 369
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 31.9 bits (69), Expect = 0.100
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 164 AVFAKTGNAPNIIIAGPPGVGKTTTIL 244
A++A + N +I GPPG GKT TIL
Sbjct: 1278 AIYASSVNDGFTLIQGPPGTGKTKTIL 1304
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 31.9 bits (69), Expect = 0.100
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 101 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
E R D ++G ED + R N ++ G PGVGKT+ LA+
Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLAR 224
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2
Query: 191 PNIIIAGPPGVGKTT 235
PNIII G PG GKTT
Sbjct: 9 PNIIICGTPGTGKTT 23
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.9 bits (64), Expect = 0.40
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 125 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
D ++G E+ + R N + GP GVGKT + LA
Sbjct: 111 DPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLA 153
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 191 PNIIIA--GPPGVGKTTTILCLAQLSSEY 271
P +I+A GPPG GK+T I L + S+Y
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVRRYSKY 101
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 28.7 bits (61), Expect = 0.93
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 399 YHYFMSTRWQS--NLLLRKHFYLIPDDIY 319
Y ++STRW LLLR +Y P DIY
Sbjct: 197 YTEYVSTRWYRAPELLLRDSYYSFPVDIY 225
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 164 AVFAKTGNAPNIIIAGPPGVGKTTTIL 244
A+ N +I GPPG GKT TI+
Sbjct: 1137 AIMCALDNNGFTLIQGPPGTGKTKTII 1163
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = -2
Query: 703 WAVDCRLFRADRKSPCAVKTTALTPSSVYDRFSLLQISITFASICASLSLEYRST 539
W + C +F+A+ +V+T +SV+D+ +LL + ++ S + L+ S+
Sbjct: 173 WHIPCPIFKAEDLFNLSVRTWKNPSASVHDK-ALLYLILSIGSAASYFDLQSNSS 226
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 197 IIIAGPPGVGKTTTILCLAQLSSEYL 274
I++ G PGVGKT+ I LA+ + L
Sbjct: 1562 ILLEGSPGVGKTSLITALARETGHQL 1587
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 152 VSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQL 259
+ +LA +T N P +++ G G GKTTTI LA L
Sbjct: 457 LEQLAAGVQT-NEP-LLLVGETGTGKTTTIQLLAGL 490
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 197 IIIAGPPGVGKTTTILCLA-QLSSEYLS 277
+++ GPPG GKT +A +LS E++S
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVS 718
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Frame = +2
Query: 65 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAV-----------FAKTGNAP--NIII 205
P S + +E+ T+ D+ G ++ + RL F K G P I++
Sbjct: 159 PKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIML 218
Query: 206 AGPPGVGKT 232
GPPG GKT
Sbjct: 219 YGPPGTGKT 227
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 202 YSWTSWCWKNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKI 342
Y+ T CW+ +DY + +S L N S +GI VV N +
Sbjct: 511 YNPTKHCWEGNDYAIRDFD-TPISPSRPALISNISTKKGIQVVGNMV 556
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 482 KRVVLEYSSMVRLNAC*APSVMLSASSSITILCRPGGKVT 363
+ + ++S + P ++L++SSSI LC+P K++
Sbjct: 188 RSIARSFNSSYKEKILTVPDIILNSSSSIMALCQPEKKMS 227
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 197 IIIAGPPGVGKTTTILCLAQ 256
I++AGPP GKT + +AQ
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQ 87
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 170 FAKTGNAP--NIIIAGPPGVGKTTTI-LCLAQLSSEYL 274
F K G P ++ GPPG GKT C AQ ++ +L
Sbjct: 211 FRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFL 248
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 561 SDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSA 677
+D+ +LAK+ ICN +N + + A GD+ SA
Sbjct: 365 NDSAVLAKLQSICNPKNPTLLYRNFVKIGQGASGDVYSA 403
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 382 RHKIVILDEAD-SMTDGAQQALRRTM-ELYSSTTRFALA 492
R KI+ILDE S+ D Q +++T+ E + T +A
Sbjct: 1373 RSKIIILDECTASVDDAMDQKIQKTLREAFGDATMLCIA 1411
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 200 IIAGPPGVGKTTTILCLAQ 256
+I GPPG GKT T++ + Q
Sbjct: 229 LIHGPPGTGKTHTLVEIIQ 247
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 401 SITILCRPGGKVTFCCANIFILFRTTSIPRSFEAF 297
+I +LC GG+V N+ LF SI E F
Sbjct: 448 TIFVLCGMGGRVDHAIGNLNHLFWAASISEKNEVF 482
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 191 PNIIIAGPPGVGKTTT 238
P +I GPPG GKT T
Sbjct: 408 PLSLIQGPPGTGKTVT 423
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 119 TFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTI 241
T ++ VG + S++ + G N+++ GP G GK+T I
Sbjct: 8 TLNNYVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLI 49
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 200 IIAGPPGVGKTTTILCL 250
+I G PG GKTTTI L
Sbjct: 952 LILGMPGTGKTTTISSL 968
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 FAKTGNAPN--IIIAGPPGVGKTTTILCLA-QLSSEYLS 277
F + G P+ ++ GPPG GKT +A + S+ ++S
Sbjct: 523 FLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECSANFIS 561
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 562 LSLEYRSTAHLDCMGSIISHYYWLLMQN 479
L +E ST + C G + YW +Q+
Sbjct: 983 LGVEMSSTGEVACFGKDVKEAYWAALQS 1010
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 160 AGHSVFIANDIVESLWPVFLYPW 92
A +S FI +E LW + PW
Sbjct: 283 ANYSNFITQPTIERLWTILTGPW 305
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 167 VFAKTGNAP--NIIIAGPPGVGKTTTILCLA-QLSSEYLS 277
V+ TG P +++ GPPG GKT LA +L ++S
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKTMLANALANELGVPFIS 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,790
Number of Sequences: 5004
Number of extensions: 60267
Number of successful extensions: 303
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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