Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30426
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 107 7e-24
SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12) 78 9e-15
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038) 33 0.19
SB_18015| Best HMM Match : NACHT (HMM E-Value=5) 32 0.43
SB_19368| Best HMM Match : DEAD (HMM E-Value=4) 31 0.75
SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 31 1.3
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 30 1.7
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 29 3.0
SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032) 29 4.0
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 29 4.0
SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.0
SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_21135| Best HMM Match : Peroxin-13_N (HMM E-Value=0) 29 5.3
SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17) 28 7.0
SB_35763| Best HMM Match : DUF651 (HMM E-Value=0.26) 28 9.2
SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6) 28 9.2
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 28 9.2
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_16815| Best HMM Match : TIL (HMM E-Value=0.39) 28 9.2
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 107 bits (258), Expect = 7e-24
Identities = 53/65 (81%), Positives = 56/65 (86%)
Frame = +1
Query: 226 KNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 405
K L+ ALLGVS KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP GRHKI+ILD
Sbjct: 877 KTTSILCLARALLGVSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILD 936
Query: 406 EADSM 420
EADS+
Sbjct: 937 EADSL 941
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/53 (52%), Positives = 33/53 (62%)
Frame = +2
Query: 98 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
+EKYRP +IVGNE+TVSRL GPPG GKTT+ILCLA+
Sbjct: 848 VEKYRPTKLHEIVGNEETVSRLE--------------GPPGTGKTTSILCLAR 886
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 558 LSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLR 671
L +A L N + ++G+ A++FTA+GD+R
Sbjct: 935 LDEADSLLYPFTYDNSRQVPKVDDGLEAIIFTAEGDMR 972
>SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)
Length = 230
Score = 77.8 bits (183), Expect = 9e-15
Identities = 41/75 (54%), Positives = 48/75 (64%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRRT 453
F VLELNAS+DRGI +VR I FA + G K+VILDEAD+MT AQ ALRR
Sbjct: 40 FGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSG-FKLVILDEADAMTQDAQNALRRV 98
Query: 454 MELYSSTTRFALAAN 498
ME ++ TRF L N
Sbjct: 99 MEKFTENTRFCLICN 113
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/86 (33%), Positives = 51/86 (59%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FC+ +II +QSRC R+ LS Q+L ++ + E ++ T++G +++ AQ
Sbjct: 108 FCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERVNVTDDGRKSLLRLAQ 167
Query: 660 GDLRSALNNLQSTAQGFGHISPDNVF 737
GD+R LN LQST+ + ++ D+V+
Sbjct: 168 GDMRKVLNILQSTSMAYSVVNEDHVY 193
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 170 FAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
F P+++ GPPG GKT+TIL +A+
Sbjct: 4 FINEERLPHLLFYGPPGTGKTSTILAVAK 32
>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 325 VVRNKIKMFAQ-QKVTLPPGRH-KIVILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
VV+ +K AQ + L R K+V+L E D +T AQ ALRRTME Y+ST R L N
Sbjct: 24 VVQELLKNTAQAHSLELSAHRDFKVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCN 83
Query: 499 NSER 510
++ +
Sbjct: 84 STSK 87
>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG-RHKIVILDEAD 414
V+E+NAS+DR ++V R KI++ Q K L R +++DE D
Sbjct: 408 VVEMNASDDRAVEVFRQKIEVATQMKSVLGANERPNCLVIDEID 451
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +2
Query: 47 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSR 160
E+KQ + S+ + W+EKY P+ F +++ ++D ++R
Sbjct: 280 EEKQDEEESTPLHHGLWVEKYSPRHFTELL-SDDAINR 316
>SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038)
Length = 1172
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 116 QTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSSE 268
+T D DT + N +II+AGPPG GK++ I L + +E
Sbjct: 1073 ETLDGTTLTIDTTAATGRCTVVRNRTSIIVAGPPGTGKSSCISALIETLTE 1123
>SB_18015| Best HMM Match : NACHT (HMM E-Value=5)
Length = 166
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +2
Query: 83 TNLPWIEKYRPQT----FDDIVGNED-TVSRLAVFAKTGNAPN-IIIAGPPGVGKTT 235
T LPW+E T F D++ ED +V +L ++ N I++ G PG+GKTT
Sbjct: 22 TPLPWMEGLSKHTLQHLFKDLLIAEDGSVVKLCDLLESDNTKKRILLEGNPGIGKTT 78
>SB_19368| Best HMM Match : DEAD (HMM E-Value=4)
Length = 217
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 107 YRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQL 259
Y+ T I+ + + AV +I G PG GKTTTI CL ++
Sbjct: 97 YQDTTVHTIIQELNAGQKRAVCKALTAEDYALILGMPGTGKTTTIACLVKV 147
>SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 191 PNIIIAGPPGVGKTTTILCLA-QLSSEYLS 277
PNI+I G PG GK+TT + LA +L +Y++
Sbjct: 9 PNILITGTPGTGKSTTGVELANRLGFKYIN 38
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 31.1 bits (67), Expect = 0.99
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +2
Query: 83 TNLPWIEKYRPQTFDDIVGN----ED-TVSRLAVFAKTGNAPN-IIIAGPPGVGKTT 235
T LPW+E T + N ED +V +L ++ N I++ G PG+GKTT
Sbjct: 269 TPLPWMEALSKHTLQHLFKNLLIAEDGSVVKLCDLLESDNTKKRILLEGNPGIGKTT 325
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 213 GPAIIMLGALPVLAKTAKR-DTVSSLPTISSKVCGLYFSIHGKFVD 79
GP++I LG + L K DT+ S +C +Y +HGK VD
Sbjct: 558 GPSLISLGKVMGLTVIEKYVDTLDKTFKYSKLLCQVYAGVHGKDVD 603
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 24/88 (27%)
Frame = +2
Query: 65 PSSSKSTNLPWIEKYRPQTFDDIVGNED---------------------TVSRLAVFAKT 181
P +L W++KY+P I+G + T+ + + F K
Sbjct: 206 PVVKAEASLMWVDKYKPSGIKQIIGQQGDKSNMRKLLNWVRNWHKNRTKTLPKSSFFNKD 265
Query: 182 GNAPNI---IIAGPPGVGKTTTILCLAQ 256
+ ++ +++GPPGVGKTTT + Q
Sbjct: 266 TDGASLKAALLSGPPGVGKTTTATLVCQ 293
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 197 IIIAGPPGVGKTTTILCLAQLSSE 268
II+AGPPG GK++ I L + +E
Sbjct: 2 IIVAGPPGTGKSSCISALIETLTE 25
>SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 191 PNIIIAGPPGVGKTTTILCLAQLS 262
P I++AGPPG GKT +A S
Sbjct: 18 PGILLAGPPGCGKTLLAKAIANES 41
>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
Length = 1199
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRL 163
LPW E+++P +++GN +RL
Sbjct: 548 LPWSERFKPTCSSEVMGNASATTRL 572
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 191 PNIIIAGPPGVGKTTTILCLAQLS 262
P I++AGPPG GKT +A S
Sbjct: 18 PGILLAGPPGCGKTLLAKAIANES 41
>SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1821
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 53 KQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN 187
+++ P K+ N+PW+ + D++ N D + R A+ +K N
Sbjct: 1158 RKINPYRKKAFNVPWLTR----EIKDLINNRDKLKRKAMVSKLRN 1198
>SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 200 IIAGPPGVGKTTTIL 244
+I GPPG GKTTT++
Sbjct: 254 VIHGPPGTGKTTTVV 268
>SB_21135| Best HMM Match : Peroxin-13_N (HMM E-Value=0)
Length = 383
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 609 NLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHIS 722
N Y +EG S V A+ ++A +++S Q FG I+
Sbjct: 101 NRGYGQEGTSTFVRRAEESSQAAFQSVESIVQAFGSIA 138
>SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17)
Length = 786
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 113 PQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 253
P + VG E + TG + I GPPG GK+ + +A
Sbjct: 102 PAKVPNFVGRESECQAVFTKLTTGPCQIVTITGPPGFGKSCVAIHVA 148
>SB_35763| Best HMM Match : DUF651 (HMM E-Value=0.26)
Length = 436
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Frame = +2
Query: 71 SSKSTNLPWIE---------KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGV 223
+S+ T LPWIE Y+ I G++ + +L +++ G PGV
Sbjct: 354 ASQITPLPWIEFEPHFSLEKMYKEPNITAIDGSKVEIRKLFESGPRRKTRRVLLEGNPGV 413
Query: 224 GKTT 235
GKT+
Sbjct: 414 GKTS 417
>SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6)
Length = 153
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 564 DAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
D I+ +IE+CN N + EEG +V AQ A ++L+
Sbjct: 88 DHGIIYLIIEVCNAWNGPWKEEGGKVIVDVAQQHESYARSHLE 130
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 155 SRLAVFAKTGNAPNIIIAGPPGVGKTT 235
+++ F ++++ GPPG+GKTT
Sbjct: 40 TQVTQFEMAAYKKHVLLTGPPGIGKTT 66
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 98 IEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTI 241
+E ++ + D +V DTV ++ +++ GPPG GKT T+
Sbjct: 2500 VETHKVASPDVVVPTLDTVRHETLLYTWLAEHKPLVLCGPPGSGKTMTL 2548
>SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)
Length = 225
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 279 FERYSEESCAKHSIVVVFPTPGGPAIIMLGALPVLAKTAKRDTVSSLPTISSKV 118
F+ + E + + I V P+P A M + + +AK VSS T S V
Sbjct: 89 FDDWKEIAAPPNEITVTTPSPSSTATPMSSVTSIQSSSAKTTQVSSSVTTSDAV 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,782,403
Number of Sequences: 59808
Number of extensions: 485182
Number of successful extensions: 1246
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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