Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30426
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 141 5e-34
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 71 9e-13
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 70 2e-12
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 44 2e-04
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 35 0.053
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 33 0.21
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 33 0.21
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 31 0.87
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 30 2.0
Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical ... 29 3.5
AL110487-4|CAB54427.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81560-8|CAN86623.1| 173|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 28 6.1
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 8.1
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 8.1
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 141 bits (341), Expect = 5e-34
Identities = 69/97 (71%), Positives = 79/97 (81%)
Frame = +1
Query: 220 CWKNDDYTMLSAALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 399
C K L+ LLG K+AVLELNAS++RGIDVVR++IK FAQ KVTLP GRHKI+I
Sbjct: 54 CGKTTSVWALARELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIII 113
Query: 400 LDEADSMTDGAQQALRRTMELYSSTTRFALAANNSER 510
LDEADSMTDGAQQALRRTME+Y+ TTRFALA N SE+
Sbjct: 114 LDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEK 150
Score = 97.9 bits (233), Expect = 7e-21
Identities = 42/80 (52%), Positives = 61/80 (76%)
Frame = +3
Query: 507 EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNN 686
+IIEPIQSRCA+LRY++LS Q+L +V E+ E ++Y + G+ A++FTAQGD+R ALNN
Sbjct: 150 KIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNN 209
Query: 687 LQSTAQGFGHISPDNVFKVC 746
LQ+T + ++ +NV KVC
Sbjct: 210 LQATVNAYELVNKENVLKVC 229
Score = 80.6 bits (190), Expect = 1e-15
Identities = 34/62 (54%), Positives = 43/62 (69%)
Frame = +2
Query: 71 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
S K PW+EKYRP+ DIVGNE+ V RL V GN PNI+++GPPG GKTT++ L
Sbjct: 4 SEKQQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWAL 63
Query: 251 AQ 256
A+
Sbjct: 64 AR 65
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 70.9 bits (166), Expect = 9e-13
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +2
Query: 62 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 241
K +++ ++NLPW+EKYRP D++V +E V L F + P+++ GPPG GKTTT+
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 242 LCLAQ 256
L A+
Sbjct: 80 LAAAR 84
Score = 70.1 bits (164), Expect = 2e-12
Identities = 42/79 (53%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Frame = +1
Query: 286 VLELNASNDRGIDVVRNKIKMFAQQK------VTLPPGR--HKIVILDEADSMTDGAQQA 441
VLELNAS++RGIDVVRN I FAQ K + G K+VILDEAD+MT AQ A
Sbjct: 96 VLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNA 155
Query: 442 LRRTMELYSSTTRFALAAN 498
LRR +E Y+ RF + N
Sbjct: 156 LRRVIEKYTDNVRFCIICN 174
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/87 (34%), Positives = 48/87 (55%)
Frame = +3
Query: 480 FCISSQ***EIIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQ 659
FCI I+ IQSRC R++ L I+ ++ I E L T +G A++ ++
Sbjct: 169 FCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSK 228
Query: 660 GDLRSALNNLQSTAQGFGHISPDNVFK 740
GD+R+ +N LQSTA F +S + V++
Sbjct: 229 GDMRTVINTLQSTAMSFDTVSENTVYQ 255
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Frame = +1
Query: 274 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH----KIVILDEADSMTDGAQQA 441
F D VL+LNAS++RGI VVR KI+ F++ + KI+ILDE D+MT AQ A
Sbjct: 78 FHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAA 137
Query: 442 LRRTMELYSSTTRFALAANNSER 510
+RR +E +S TTRF L N R
Sbjct: 138 MRRVIEDFSKTTRFILICNYVSR 160
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 89 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQ 256
L W EKYRP+T DDI ++ V+ L + + P+++ GPPG GKT+ L +
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNL 689
+I P+ SRCA R+ L + ++ IC+ E +++ + V+ ++GDLR A+ L
Sbjct: 161 LIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTL 220
Query: 690 QSTA 701
QS A
Sbjct: 221 QSLA 224
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 325 VVRNKIKMFAQ--QKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAAN 498
VV++ +K AQ Q + K+V+L EADS+T AQ LRRTME Y++ + L+
Sbjct: 109 VVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCE 168
Query: 499 NSER 510
+ R
Sbjct: 169 SLSR 172
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +3
Query: 510 IIEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSAL 680
IIEP+QSRC ++ +D + + ++ +E+ E + +V ++G+LR A+
Sbjct: 173 IIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAI 229
Score = 35.5 bits (78), Expect = 0.040
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 WIEKYRPQTF---DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 250
W++KYRP+ D + + + + L F P+++ GP G GK T I CL
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCL 57
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +3
Query: 513 IEPIQSRCAVLRYSRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQ 692
I + + C LR+ + I ++++ IC++E + +E + ++ + D+R + NLQ
Sbjct: 459 IRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQ 518
Query: 693 STAQGFG 713
++G G
Sbjct: 519 MRSKGVG 525
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 98 IEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSSE 268
IE +R D +V DTV + + A +++ GPPG GKT T+L + E
Sbjct: 2499 IESHRVAAADLVVPTIDTVRHEMLLAAWLAEHKPLVLCGPPGSGKTMTLLAALRSQQE 2556
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 98 IEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAQLSSE 268
IE +R D +V DTV + + A +++ GPPG GKT T+L + E
Sbjct: 2499 IESHRVAAADLVVPTIDTVRHEMLLAAWLAEHKPLVLCGPPGSGKTMTLLAALRSQQE 2556
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +2
Query: 197 IIIAGPPGVGKTTTILCLAQLSSEYLSK 280
I++ G PG GK++T++ LAQL+ +++
Sbjct: 1352 ILLEGAPGCGKSSTVMALAQLTGNPITR 1379
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 44 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK-TGNAPNIIIAGPPG 220
PEKK K SSS+S + I D++ + +K T + +I ++G PG
Sbjct: 146 PEKKSRKESSSESDSEEIISTSSEGALKGRREEFDSLKLWIMKSKETNTSLSIYVSGQPG 205
Query: 221 VGKTTTIL 244
GKT T +
Sbjct: 206 TGKTATTM 213
>Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 580 ASICASLSLEYRSTAHLDCMGSIISHYYWLLMQNELYWNTAPW 452
A S +++ +DCMGS Y ++ Q W TA W
Sbjct: 18 AQFSVSAAVKCFDCVGMDCMGSFCEGEYCMISQYAPRWGTARW 60
>AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 580 ASICASLSLEYRSTAHLDCMGSIISHYYWLLMQNELYWNTAPW 452
A S +++ +DCMGS Y ++ Q W TA W
Sbjct: 18 AQFSVSAAVKCFDCVGMDCMGSFCEGEYCMISQYAPRWGTARW 60
>AL110487-4|CAB54427.1| 505|Caenorhabditis elegans Hypothetical
protein Y39E4B.5 protein.
Length = 505
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -2
Query: 643 TALTPSSVYDRFSLLQISITFASICASLSLEYRSTAHLDCMGSIISHYYW 494
+++ +S+ DRFS ++ ITF + L + + +HL +++S Y W
Sbjct: 315 SSICGASIIDRFSRRKLLITFGILSNVLLVAFSFFSHLS--ATVVSPYSW 362
>Z81560-8|CAN86623.1| 173|Caenorhabditis elegans Hypothetical
protein K02E2.8b protein.
Length = 173
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -3
Query: 282 VFERYSEESCAKHSIVVVFPTPGGPAIIML---GALP 181
+F RY EE+ A V+ F P G A +L G LP
Sbjct: 91 MFRRYPEETTADAQCVITFSCPAGTAAYLLTIVGELP 127
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -3
Query: 282 VFERYSEESCAKHSIVVVFPTPGGPAIIML---GALP 181
+F RY EE+ A V+ F P G A +L G LP
Sbjct: 106 MFRRYPEETTADAQCVITFSCPAGTAAYLLTIVGELP 142
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 322 DVVRNKIKMFAQQKVTLPPGRHKI---VILDEADSMTDGAQQALRRTMELYSSTTR 480
D++R+KI+ Q + L P H I + D D +DG + + T+E + S R
Sbjct: 351 DILRSKIEELVIQ-IRLKPHYHMIHVAIATDRLDFFSDGMIKTMNETLEPFESQLR 405
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 176 KTGNAPNIIIAGPPGVGKTT 235
+T PNI++ G PG GK+T
Sbjct: 5 ETRRRPNILVTGSPGTGKST 24
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 116 QTFDDIVGNEDTVSRLAVFAKTGNAPNIIIA--GPPGVGKTTTILCLAQ 256
+ DD+ E + LAV + +I+ GPPG+GKT+ +A+
Sbjct: 305 EAMDDV--KERVLEHLAVCKMNNSVKGMILCFTGPPGIGKTSIAKAIAE 351
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 197 IIIAGPPGVGKTTTILCLAQ 256
++IAGPP GKT L ++Q
Sbjct: 85 VLIAGPPATGKTAIALAMSQ 104
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 188 APNIIIAGPPGVGKTTTILCL 250
+P +I+GP G GKTTTI L
Sbjct: 43 SPCTLISGPNGTGKTTTIEAL 63
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 188 APNIIIAGPPGVGKTTTILCL 250
+P +I+GP G GKTTTI L
Sbjct: 29 SPCTLISGPNGTGKTTTIEAL 49
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 188 APNIIIAGPPGVGKTTTILCL 250
+P +I+GP G GKTTTI L
Sbjct: 29 SPCTLISGPNGTGKTTTIEAL 49
>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
protein R193.2 protein.
Length = 1853
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 552 SRLSDAQILAKVIEICNKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHIS 722
S +S ++ ++ + +NL+ + G SAV+ D SA+N L +T G S
Sbjct: 684 SMISPFKMSVSLVYFSSPDNLAPNQSGQSAVLLDHATDGNSAINTLNNTNLPIGAAS 740
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,592,757
Number of Sequences: 27780
Number of extensions: 348654
Number of successful extensions: 1036
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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