Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30424
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 51 2e-07
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 3.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 7.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.6
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 518 FDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLIFTIAVSGNIASY 694
F+V+T +VV+R I +++P + N+FD + +PDLYGP WI+ T+I + S +I Y
Sbjct: 56 FNVETKDVVQRCIHTLIP---TVNFFDV-VDDRPDLYGPFWITTTVIQALFFSNSITEY 110
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 576 FWGNTDDIILSTTSLVCTSKY-FCNTLLSRSCDSTEVE 466
F GN+DD++LST L + + F N ++++ C S ++
Sbjct: 193 FNGNSDDVLLSTDHLGKIAVHEFYNLVINKHCTSWNLD 230
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 241 NEIKQILEKFTVQYWLVKMLTSYIKFQVIAKV 146
+E+K LEK ++ + L K L ++I+ + A+V
Sbjct: 127 SEVKDKLEKLSIHHPLKKDLLAFIQLDIAAEV 158
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 473 SVESQLLDNRV-LQKYFDVQTSEVVE-RIISSVLPQKVSRNYFDEKIKGKPDLYGPIWI 643
+V+ L N + ++KYFD++ E+ E + V+ ++ + + K P GP ++
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYV 1224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,498
Number of Sequences: 5004
Number of extensions: 67795
Number of successful extensions: 174
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -