Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30424
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497...    75   9e-14
05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493...    72   6e-13
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279...    33   0.27 
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044     28   7.6  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    28   7.6  
12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490     28   7.6  
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179...    28   7.6  

>01_05_0668 -
           24147412-24147618,24148019-24148286,24149506-24149728,
           24149822-24149996
          Length = 290

 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 42/90 (46%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +2

Query: 515 YFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLIFTIAVSGNIASY 694
           YFDV TS+VVERI  SV P    R  F EK    PDLYGP W   TLIF  A      +Y
Sbjct: 100 YFDVDTSDVVERIWESVFP---FRGTFTEKTSENPDLYGPFWTCTTLIFVAASIATFVTY 156

Query: 695 LQNVNKAVHWRYDFHLVSYAATA--*YVTF 778
           L +      W YD +LV+++A     YVTF
Sbjct: 157 LSHKWHKKEWNYDINLVTWSAGLFYGYVTF 186


>05_05_0081 +
           22248963-22249016,22249120-22249165,22249259-22249357,
           22250178-22250337,22250858-22251128,22251295-22251486
          Length = 273

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = +2

Query: 515 YFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLIFTIAVSGNIASY 694
           YF+V T  VV+R+ISSV P     + F  KI   PD+YGP+WI+ TLIF +A  GN A+Y
Sbjct: 88  YFNVDTDVVVDRLISSVYPM----DGFFRKIDANPDMYGPLWITTTLIFMLAAFGNFATY 143

Query: 695 LQNVNKAVH-WRYDFHLVSYAATA*Y 769
           L      ++ W +D    ++AA+  Y
Sbjct: 144 LMQRKTDLNIWSFDVGYFNWAASVMY 169


>03_06_0483 -
           34226496-34226864,34227140-34227360,34227677-34227933,
           34228388-34228483,34228660-34228805,34229774-34229977
          Length = 430

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 659 FTIAVSGNIASYLQNVNKAVHWRYDFHLVS 748
           F IA +G+ +S L +V K + WR  FH+++
Sbjct: 158 FYIAANGDFSSLLSSVKKTIRWRETFHILT 187


>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
          Length = 578

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 533 WSAHQSISVILYCPEVVIRLRLSLC 459
           W AH    V +Y P+++I L L  C
Sbjct: 81  WQAHDLCQVRMYNPQIIIELALKQC 105


>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
            19799503-19799671,19799758-19799850
          Length = 1330

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 437  NARSCSRSRDSTSVESQLLDNRVLQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGK 616
            N  +CS +  S +  S   D  +L   +  Q + + ERI+ +V+P K  R+    +I G 
Sbjct: 827  NVSNCSEA--SLAELSNKNDMELLSLEWSNQHNRINERILDTVVPYKRIRHL---RISGY 881

Query: 617  PDLYGPIWI 643
              +  P+WI
Sbjct: 882  KGVLPPLWI 890


>12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490
          Length = 241

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 549 GLYHQYCPRKSLETILMRRSKANLICMDLSGF 644
           G+ HQ C + S++T  + R+  + I  ++ GF
Sbjct: 66  GIEHQSCSKSSIQTFALSRNDFSPIAQEVEGF 97


>07_03_0200 -
           15016084-15016342,15016814-15016869,15016963-15017960,
           15018707-15018768,15019242-15019274,15019697-15019881,
           15020033-15020133,15020783-15020795,15021216-15021319,
           15021593-15021693,15022773-15022849,15022965-15023021,
           15023158-15023268,15023803-15023859
          Length = 737

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 492 WTIE-YYRNTLMCRPVKLWRGLYHQYCPRKSLE 587
           WTI+ +YR+ +  RP+ +W   Y    PR  LE
Sbjct: 661 WTIDGHYRSLIYMRPLAIWAMQYALSPPRTILE 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,655,207
Number of Sequences: 37544
Number of extensions: 378741
Number of successful extensions: 971
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)