Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30424
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   4e-15
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)                 29   3.4  
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  29   4.4  

>SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 36/77 (46%), Positives = 49/77 (63%)
 Frame = +2

Query: 509 QKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLIFTIAVSGNIA 688
           Q +FDV T +V  RI+ S++P    RN+    I+  PDLYGP W+  TL+FT A++GN+A
Sbjct: 93  QAFFDVDTYQVGHRILGSMVPA-YKRNFLISHIRPNPDLYGPFWVCATLVFTTAIAGNLA 151

Query: 689 SYLQNVNKAVHWRYDFH 739
           SYL +      W YDFH
Sbjct: 152 SYLVHTGDH-EWVYDFH 167


>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
          Length = 338

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 384 HVLPRHQYAQFAHCVPGNSPGNLTTRPYGRW 292
           +VL  +Q  Q A+ +P N P NL +RP   W
Sbjct: 131 NVLRYYQETQVANVLPWNLPSNLVSRPNDIW 161


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 733 FSFGVLCSNSIVCYVWLVL 789
           FSF V+CS  + C++W ++
Sbjct: 397 FSFSVICSRKLPCFLWKII 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,897,197
Number of Sequences: 59808
Number of extensions: 486002
Number of successful extensions: 1088
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)