Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30424
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27490.1 68418.m03286 integral membrane Yip1 family protein c...    79   5e-15
At3g05280.1 68416.m00576 integral membrane Yip1 family protein c...    78   6e-15
At2g39805.1 68415.m04889 integral membrane Yip1 family protein c...    66   2e-11
At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    33   0.29 
At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma m...    30   2.1  
At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma m...    30   2.1  
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera...    28   8.4  

>At5g27490.1 68418.m03286 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 282

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 39/85 (45%), Positives = 49/85 (57%)
 Frame = +2

Query: 515 YFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLIFTIAVSGNIASY 694
           YFDV TS+VVER+  S+ P    R  F EK    PDLYGP WI  TLIF  A  G   +Y
Sbjct: 92  YFDVDTSDVVERLKESLFP---FRGTFTEKTANNPDLYGPFWICTTLIFVAASIGTFVTY 148

Query: 695 LQNVNKAVHWRYDFHLVSYAATA*Y 769
           + +  K   W YD +LV+++A   Y
Sbjct: 149 IAHKLKKQEWNYDINLVTWSAGVFY 173


>At3g05280.1 68416.m00576 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 39/85 (45%), Positives = 50/85 (58%)
 Frame = +2

Query: 515 YFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLIFTIAVSGNIASY 694
           +FDV TS+VVER+  S+ P    R  F EK   KPDLYGP WI  TLIF  A  G   +Y
Sbjct: 91  FFDVDTSDVVERLKESLFP---FRGTFTEKTADKPDLYGPFWICTTLIFVAASIGTFVTY 147

Query: 695 LQNVNKAVHWRYDFHLVSYAATA*Y 769
           + +  K   W YD +LV+++A   Y
Sbjct: 148 IAHKWKKQEWNYDINLVTWSAGVFY 172


>At2g39805.1 68415.m04889 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 275

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
 Frame = +2

Query: 512 KYFDVQTSEVVERIISSVLPQKVSRNYFDEKIKGKPDLYGPIWISLTLIFTIAVSGNIAS 691
           +YFDV T  V+ R++SS+ P   S ++F+ KI   PDLYG +WI  TL+F +A  GN A+
Sbjct: 86  QYFDVDTDVVLNRLMSSLYP--TSGDFFN-KIDANPDLYGLVWICTTLVFVLASLGNCAT 142

Query: 692 YL--QNVNKAVHWRYDFHLVSYAATA*Y 769
           YL  +  +    W +D + ++ AA+  Y
Sbjct: 143 YLVKKRTDSNAPWIFDVNYMNLAASIIY 170


>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 153 AITWNLMYDVNILTSQYCTVNFSKICLISFF 245
           ++ W  M+ VNIL++     NF K+CL +++
Sbjct: 261 SVKWEKMFSVNILSTNCLDANFWKLCLAAYY 291


>At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 946

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 690 VIYRMLTRQSIGAMIFIWCLMQQQHSMLRLVGP 788
           V++R +  QS+  ++ IWCL  +  +M  L GP
Sbjct: 814 VMWRNILGQSLYQLVIIWCLQTKGKTMFGLDGP 846


>At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 1020

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 690 VIYRMLTRQSIGAMIFIWCLMQQQHSMLRLVGP 788
           V++R +  QS+  ++ IWCL  +  +M  L GP
Sbjct: 888 VMWRNILGQSLYQLVIIWCLQTKGKTMFGLDGP 920


>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 198 GLSKC*RRTLNSKLLQKYKNRYCFRPRNETL 106
           GLS+  +RT N+KLL    NR C  P  E L
Sbjct: 63  GLSETEKRTNNTKLLLTLLNRNCESPFRECL 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,178
Number of Sequences: 28952
Number of extensions: 331250
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)