Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30423
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 37 0.003
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 36 0.009
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 33 0.050
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 33 0.066
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 33 0.066
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 31 0.20
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 30 0.35
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 30 0.47
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 30 0.47
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.82
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 29 1.1
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 28 1.4
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 28 1.4
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 28 1.9
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.9
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 2.5
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 3.3
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 3.3
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 27 3.3
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 27 3.3
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 27 3.3
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 27 4.4
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||... 26 5.8
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 26 7.6
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 26 7.6
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/30 (46%), Positives = 24/30 (80%)
Frame = +1
Query: 256 FYQPTHGIILVHDLTNRKSQVNLQKWLAEI 345
+Y+ HGII+V+D+T++ S N+++WL EI
Sbjct: 77 YYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
Score = 30.7 bits (66), Expect = 0.27
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 41 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 220
K++++GDSGVGK+ L A + S T+G +++ + EG T +++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFEL-EG----KTVKLQIWDT 64
Query: 221 GGSNGHRNTRDGF 259
G R +
Sbjct: 65 AGQERFRTITSSY 77
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 35.5 bits (78), Expect = 0.009
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = +1
Query: 256 FYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSNPTLQHVDVDPEQFLGSTQIPILV 435
FY+ +LV+D+ N KS L W E L Q S + +PE F P ++
Sbjct: 77 FYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPS--------NPETF------PFIL 122
Query: 436 IGTKYDAAEEKQRKNQYRRLA 498
+G K D E+K+ ++ + LA
Sbjct: 123 LGNKVDVEEQKRMVSKSKALA 143
Score = 32.7 bits (71), Expect = 0.066
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 38 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 217
+KV++LG+SGVGKTS+ + + K T+G KE ++LWD
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLT-----KEVLVDDKVVTLQLWD 63
Query: 218 VGG 226
G
Sbjct: 64 TAG 66
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 33.1 bits (72), Expect = 0.050
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 38 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 217
VK+V+ G SG GK+ L N+ TVG ++ G Q Q +++WD
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQ-QKRIKLQIWD 68
Query: 218 VGGSNGHRN 244
G R+
Sbjct: 69 TAGQEKFRS 77
Score = 32.3 bits (70), Expect = 0.088
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 250 RWFYQPTHGIILVHDLTNRKSQVNLQKWLAEI 345
R +Y+ G +LV+D+TN+ S L WL++I
Sbjct: 80 RNYYRGAAGAVLVYDVTNKDSFEELSSWLSDI 111
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 32.7 bits (71), Expect = 0.066
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +2
Query: 38 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 217
+KVV+LGDSGVGKT L + + K T+G K+ ++LWD
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLT-----KDVVVDDKLVTLQLWD 63
Query: 218 VGG 226
G
Sbjct: 64 TAG 66
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 256 FYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 366
FY+ ++V+++ N KS +++ W E L Q S +
Sbjct: 77 FYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQD 113
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 32.7 bits (71), Expect = 0.066
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 256 FYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 366
+Y+ GI+L++D+T++KS N++ W + + S N
Sbjct: 78 YYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASEN 114
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +2
Query: 38 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYK-EGTQAQNTFFVELW 214
+K++++GDSGVGK+ L L+ ++ +P + ++ K+ + +G + + +++W
Sbjct: 10 IKLLLIGDSGVGKSCL--LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK----LQIW 63
Query: 215 DVGGSNGHR 241
D G R
Sbjct: 64 DTAGQERFR 72
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 31.1 bits (67), Expect = 0.20
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 256 FYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 366
+Y+ G ++V+D+T + S N+ +WL E+ SN
Sbjct: 79 YYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSN 115
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +2
Query: 41 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 220
K V++GDSGVGK++L N+ + T+G VE ++WD
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIG--VEFATRNI---VLDNKKIKAQIWDT 66
Query: 221 GGSNGHR 241
G +R
Sbjct: 67 AGQERYR 73
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 30.3 bits (65), Expect = 0.35
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 280 ILVHDLTNRKSQVNLQKWLAEI 345
I+V+D+TN S VN +KW+ ++
Sbjct: 88 IIVYDITNHNSFVNTEKWIEDV 109
Score = 29.5 bits (63), Expect = 0.62
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +2
Query: 26 AIEKVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFV 205
++ K K+V LG+ VGKTSL +++ + T+G K Y E T +
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKT-MYLE----DRTVRL 62
Query: 206 ELWDVGGSNGHRN 244
+LWD G R+
Sbjct: 63 QLWDTAGQERFRS 75
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 41 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 220
K+V+LGDS VGK+SL ++ T+G + + E T + +E+WD
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVK----LEIWDT 71
Query: 221 GGSNGHRN 244
G +++
Sbjct: 72 AGQERYKS 79
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 178 NTSPKHVLRRTLGCRRLKWT*KHKRWFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQ 354
NTS K + T G R K +Y+ + I+V+D+T S + W+ E+ Q
Sbjct: 61 NTSVKLEIWDTAGQERYK---SLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQ 116
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 29 IEKVKVVVLGDSGVGKTSLT------HLIAHNKPILSPGWTVGCSVE 151
+ + K+VV+GD GVGK++LT H + P + + C ++
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEID 52
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 29 IEKVKVVVLGDSGVGKTSLTHLIAHNKPILS 121
+++V+VV+ GD GVGK+SL + + S
Sbjct: 1 MKEVRVVICGDQGVGKSSLISALIQEDNVTS 31
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 531 FRQHRIVHYTTCESSILIFPLFFLRSVVFSP 439
FRQ RI + + ++ PLFF+ ++F P
Sbjct: 29 FRQQRIKSWQPLLTPKIVLPLFFVLGIIFGP 59
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -1
Query: 507 YTTCESSILIFPLFFLRSVVF 445
YT C SSILIF FF SV+F
Sbjct: 153 YTMCRSSILIFVFFF--SVIF 171
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 38 VKVVVLGDSGVGKTSLTHLIAHNK-PILSP 124
+ V +LG S GK+SL +L+A+ + I+SP
Sbjct: 240 INVAILGPSNAGKSSLINLLANRRISIVSP 269
>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 168 YLCNLTSTEQPTVHPGDKMGLLCAIKCVKDVLP 70
YLC + E P +H GD +L +K V ++ P
Sbjct: 118 YLCCFDTLEVPIIHNGDSKTILDELKKVIELYP 150
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 32 EKVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCS-VEVKLHK 166
E ++V G+SG GKT T I ++ TVG S VE ++ K
Sbjct: 162 ENQSILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQIIK 207
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 32 EKVKVVVLGDSGVGKTSLTHLIAH 103
+K +++ G +G GKT+L H+IAH
Sbjct: 415 DKRIMMLTGLAGAGKTTLAHVIAH 438
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 44 VVVLGDSGVGKTSLTHLIAHNKP 112
+ + GD G GKT+L L HN P
Sbjct: 121 IYLYGDVGCGKTALMDLFYHNLP 143
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = +2
Query: 41 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 220
K+V++GD G GKT T + H + VEV H T F +WD
Sbjct: 11 KLVLVGDGGTGKT--TFVKRHLTGEFEKKYIATLGVEV--HPLHFHTNFGEICF-NVWDT 65
Query: 221 GGSNGHRNTRDGF 259
G RDG+
Sbjct: 66 AGQEKLGGLRDGY 78
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 20 MAAIEKVKVVVLGDSGVGKTSLT 88
MA I+ ++ VLG VGK+SLT
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLT 23
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 38 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 217
+KV ++GDS +GKTSL T+G + K + + TF +WD
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIR---NTEITF--SIWD 65
Query: 218 VGG 226
+GG
Sbjct: 66 LGG 68
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 250 RWFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSNPTL 375
R ++Q T GII V D +R+ + L +LN+D L
Sbjct: 79 RHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 41 KVVVLGDSGVGKTSLTHL 94
K+V+LGD GKTSL ++
Sbjct: 15 KIVILGDGAAGKTSLLNV 32
>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 286 VHDLTNRKSQV--NLQKWLAEILNQDSSNPTLQHVDV 390
VH L +K Q+ +LQ LA++ N+D+ +H+D+
Sbjct: 10 VHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDL 46
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 YQPTHGIILVHDLTNRKSQVNLQ-KWLAEILNQDSSNPTL 375
Y +H I++ + + S N+Q KW++E+L+ SS P L
Sbjct: 75 YPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPIL 114
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -1
Query: 231 FEPPTSQSSTKNVFWACVPSLYLCNLTSTEQPTVHPGDKMGLLCAIKCVKDVLPTPESPR 52
+ T +KN WA L+L ++ + G+++GL +I +KD +P+SP
Sbjct: 195 YNTKTEAEVSKNP-WAAGTQLFLVSVLQSST-----GERVGLSGSIDMLKDEYLSPQSPS 248
Query: 51 TTTFTFSIA 25
+ F A
Sbjct: 249 FSKSNFLFA 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,680,908
Number of Sequences: 5004
Number of extensions: 80863
Number of successful extensions: 301
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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