Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30423
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   2.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   2.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 505 YYLRVFYTDFSFVFPPQRRI*SRSLKSESVWNLRTVPD 392
           +Y R F+TD    F  +  + + S+ SE + N+  VPD
Sbjct: 61  FYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNI-WVPD 97


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 505 YYLRVFYTDFSFVFPPQRRI*SRSLKSESVWNLRTVPD 392
           +Y R F+TD    F  +  + + S+ SE + N+  VPD
Sbjct: 61  FYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNI-WVPD 97


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 502 YLRVFYTDFSFVFPPQRRI*SRSLKSESVWNLRTVPD 392
           Y R F+TD    F  +  + + S+ SE + N+  VPD
Sbjct: 1   YFRQFWTDPRLAFKKRTGVETLSVGSEFIKNI-WVPD 36


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 271 ALVGKTISCVSMSI*ASDIPKFYEE 197
           A+  KT+SC+   I A + P++ +E
Sbjct: 322 AVFAKTVSCIDPWIYAINHPRYRQE 346


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 271 ALVGKTISCVSMSI*ASDIPKFYEE 197
           A+  KT+SC+   I A + P++ +E
Sbjct: 322 AVFAKTVSCIDPWIYAINHPRYRQE 346


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 492 SSILIFPLFFLRSVVF 445
           +S ++FPLFFL   VF
Sbjct: 426 ASRIVFPLFFLAINVF 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,133
Number of Sequences: 438
Number of extensions: 5527
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)