Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30421
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.9  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   3.9  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   6.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 586  WTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPS 702
            W+S ++   W  T    +  +R   +S   RPT  ++P+
Sbjct: 1043 WSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPT 1081



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 625  PVSTSHWSRTRQSSLPRRPT 684
            P +T+HW     +S   RPT
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPT 1196



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 484  YGGRCHRWLHC 452
            Y G C R+LHC
Sbjct: 1287 YPGDCTRYLHC 1297


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -2

Query: 218 QRACGFCPKPNLRFPFQWCSDHGHSCW 138
           Q  C +   PN       C+D   SCW
Sbjct: 15  QLECNWSSGPNATLQSSACTDDLSSCW 41


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 143 NYARGHYTIGKEIVDLVLDRIRKLADQCTG 232
           +YAR     G  IVD+ LD  R L   CTG
Sbjct: 392 SYARAKGLGGIAIVDITLDDFRGL---CTG 418


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 774 WLAVCCTVVTSYPRM 818
           W  VC  VV  YPR+
Sbjct: 166 WREVCTFVVQVYPRL 180


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 740 LVGGLEACVCDLG 702
           L+GG  +C CDLG
Sbjct: 703 LMGGKWSCDCDLG 715


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,887
Number of Sequences: 336
Number of extensions: 4205
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)