Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30420
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DEH3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.1  
UniRef50_Q95R15 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_A6DEH3 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 960

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 347 DKFRHYYCYHNIIYSYVRLSTASNNVSIQNIYAILNINLGHRACQTICFSNTT 189
           D     + Y N ++SY +LS+  NN++  NI  I N+N  +     +C +N T
Sbjct: 488 DSNNSVFRYQNYLFSYEKLSSIINNLNSNNI--INNLNFSYSNINILCDANIT 538


>UniRef50_Q95R15 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 165

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 215 QTICFSNTTLPLLCQKKHFLFRSDMATLKHLIKILYRLFVLRRFSILYK 69
           + I F     P  C +K+  F  +MA L +++  + +L   ++FS L+K
Sbjct: 91  ELIQFGYEPFPTTCGRKYIFFGEEMAILPNILSYMKQLSKAKKFSTLFK 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,687,564
Number of Sequences: 1657284
Number of extensions: 11886940
Number of successful extensions: 25923
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25916
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)