Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30420
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518...    29   3.8  
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678...    28   8.7  

>05_04_0275 -
           19650555-19650625,19650927-19651221,19651593-19651895,
           19651978-19652182,19652266-19652501,19652619-19652816,
           19653785-19653907,19654227-19654514,19654618-19654794,
           19655580-19655915,19656753-19656863,19656977-19657227,
           19657431-19657566
          Length = 909

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -2

Query: 290 STASNNVSI-QNIYAILNINLGHRACQTICFSN---TTLPLLCQKKHFLFRSDMATLKH 126
           +T  N  S+  N YA  NI L   A +T+  S    T +PL  Q+K   F + +  LKH
Sbjct: 701 NTKGNVFSVPSNTYAEFNIFLDPLAAKTVLDSTLDITLIPLRAQRKAASFHALLEALKH 759


>09_06_0177 +
           21365314-21366100,21367451-21367578,21367715-21367870,
           21368006-21368196,21369392-21369434,21369537-21369627,
           21369859-21369935,21370278-21370366,21370474-21370657,
           21370885-21371138,21371465-21371567,21371646-21371977,
           21372060-21372504
          Length = 959

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 224 RACQTICFSNTTLPLLCQKKHFLFRSDMATLKHLIKILYRLFV 96
           R C   C+ N  LP L +K  FL+      L H+    + L +
Sbjct: 563 RKCTPKCYLNRVLPALLKKHLFLWLKFRKILSHIAHTTFSLVI 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,606
Number of Sequences: 37544
Number of extensions: 280418
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)