Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30420
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    33   0.28 
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 215 QTICFSNTTLPLLCQKKHFLFRSDMATLKHLIKILYRLFVLRRFSILYK 69
           + I F     P  C +K+  F  +MA L +++  + +L   ++FS L+K
Sbjct: 91  ELIQFGYEPFPTTCGRKYIFFGEEMAILPNILSYMKQLSKAKKFSTLFK 139


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = -1

Query: 243 KYKLRPPGLPNYMFFQHNIATTLPKKTFSLPLRHGDFKTFD*NFIQTLCSEKVFDTLQTL 64
           KY     GL  Y+F  HN+ + L +K +       +F     + +QT C++ ++D  +  
Sbjct: 345 KYSEFHQGLKKYVFHVHNLESNLMEKYY----YQAEFN----SLVQTHCNDLIYDPAKIT 396

Query: 63  NFHIVFI 43
             H++ +
Sbjct: 397 QSHVLAV 403


>AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4a protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 118 LIKCFKVAMSERKRKCFFWQSSGNVVLEKHIVW 216
           L+K FK      KR+ FFW  + +V+    +VW
Sbjct: 307 LVKDFKKEPEWLKRQPFFWAINAHVIAMSLVVW 339


>AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4b protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 118 LIKCFKVAMSERKRKCFFWQSSGNVVLEKHIVW 216
           L+K FK      KR+ FFW  + +V+    +VW
Sbjct: 307 LVKDFKKEPEWLKRQPFFWAINAHVIAMSLVVW 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,025
Number of Sequences: 27780
Number of extensions: 300730
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)