Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30420
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.9  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   5.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.2  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 620 HGNQNLISRSTGDIL-NYFRLILPFNENN 703
           HGN +   R   D+L NY RLI P + NN
Sbjct: 16  HGNPDA-KRLYDDLLSNYNRLIRPVSNNN 43


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 219 LPNYMFFQHNIATTLPKKTFSLPLR 145
           +P Y  F HN+      ++ S PLR
Sbjct: 601 MPRYCLFGHNVTLANKFESLSEPLR 625


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 677 IENNLKYHRLSGLLSFDYRDYRINYMITKKRVRV 576
           + NN KY   +   +++ + Y  NY+I  +++ V
Sbjct: 85  LSNNYKYSNYNNYNNYNKKLYYKNYIINIEQIPV 118


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -1

Query: 573 KWFYQNNQSTVIKCNV 526
           ++FY + +  ++KCN+
Sbjct: 654 RFFYPDRKQVILKCNI 669


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -1

Query: 573 KWFYQNNQSTVIKCNV 526
           ++FY + +  ++KCN+
Sbjct: 744 RFFYPDRKQVILKCNI 759


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,265
Number of Sequences: 438
Number of extensions: 4191
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)