Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30420
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    31   1.0  
At3g20860.1 68416.m02637 protein kinase family protein contains ...    28   7.3  

>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 189  IATTLPKKTFSLPLRHGDFKTFD*NFIQTLCSEKVFDTLQTLN 61
            +A   P+      LRHGDF +F  N +     E V  TL+ LN
Sbjct: 3087 VAVARPRNWQKYCLRHGDFLSFLLNGVFHFAEESVIQTLKLLN 3129


>At3g20860.1 68416.m02637 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 427

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 577 FKMVLSK*PVNSN*MQCDFRLRLSNSMTPVWHDISNATTYKRNIDNMHLSHNK 419
           FK V+SK   N+N  +     +  ++ TP+ H+  +  T K+N D    S +K
Sbjct: 282 FKPVVSKSEHNTNENRTGLPPKTKSAKTPIKHNQESEETEKKNKDTSSSSKDK 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,790,646
Number of Sequences: 28952
Number of extensions: 260048
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)