Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30419
(496 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 94 3e-19
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 94 3e-19
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 94 3e-19
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 94 3e-19
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 94 3e-19
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 91 2e-18
AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens ... 29 8.9
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 93.9 bits (223), Expect = 3e-19
Identities = 34/47 (72%), Positives = 43/47 (91%)
Frame = +2
Query: 113 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 253
NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWT
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWT 80
Score = 50.4 bits (115), Expect = 3e-06
Identities = 30/88 (34%), Positives = 40/88 (45%)
Frame = +1
Query: 193 FPL*KEQEFLSSFELR*ALDIVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 372
+ L + Q F + L +VSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 373 PVIVXXXXXXXXXXXXXXDVGGACVLSA 456
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 93.9 bits (223), Expect = 3e-19
Identities = 34/47 (72%), Positives = 43/47 (91%)
Frame = +2
Query: 113 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 253
NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWT
Sbjct: 33 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWT 79
Score = 50.4 bits (115), Expect = 3e-06
Identities = 30/88 (34%), Positives = 40/88 (45%)
Frame = +1
Query: 193 FPL*KEQEFLSSFELR*ALDIVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 372
+ L + Q F + L +VSEQTR+ A G P+I++V++ PKQ
Sbjct: 60 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 119
Query: 373 PVIVXXXXXXXXXXXXXXDVGGACVLSA 456
PVIV VGGACVL A
Sbjct: 120 PVIVKAKFFSRRAEEKIKSVGGACVLVA 147
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 93.9 bits (223), Expect = 3e-19
Identities = 34/47 (72%), Positives = 43/47 (91%)
Frame = +2
Query: 113 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 253
NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWT
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWT 80
Score = 50.4 bits (115), Expect = 3e-06
Identities = 30/88 (34%), Positives = 40/88 (45%)
Frame = +1
Query: 193 FPL*KEQEFLSSFELR*ALDIVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 372
+ L + Q F + L +VSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 373 PVIVXXXXXXXXXXXXXXDVGGACVLSA 456
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 93.9 bits (223), Expect = 3e-19
Identities = 34/47 (72%), Positives = 43/47 (91%)
Frame = +2
Query: 113 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 253
NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWT
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWT 80
Score = 30.3 bits (65), Expect = 3.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 193 FPL*KEQEFLSSFELR*ALDIVSEQTRLKYASAPDGKVPVINIVKA 330
+ L + Q F + L +VSEQTR+ A G P+I++V++
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 93.9 bits (223), Expect = 3e-19
Identities = 34/47 (72%), Positives = 43/47 (91%)
Frame = +2
Query: 113 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 253
NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FCP +NLDKLWT
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWT 80
Score = 50.4 bits (115), Expect = 3e-06
Identities = 30/88 (34%), Positives = 40/88 (45%)
Frame = +1
Query: 193 FPL*KEQEFLSSFELR*ALDIVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 372
+ L + Q F + L +VSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 373 PVIVXXXXXXXXXXXXXXDVGGACVLSA 456
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 91.1 bits (216), Expect = 2e-18
Identities = 33/47 (70%), Positives = 43/47 (91%)
Frame = +2
Query: 113 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 253
NAGG HHHRIN DKYHPGYFGK+GM++++ ++N++FCP +NLDKLWT
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYNLKRNQSFCPTVNLDKLWT 80
Score = 47.2 bits (107), Expect = 3e-05
Identities = 29/88 (32%), Positives = 39/88 (44%)
Frame = +1
Query: 193 FPL*KEQEFLSSFELR*ALDIVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 372
+ L + Q F + L +VSEQTR+ A G P+I++V++ KQ
Sbjct: 61 YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120
Query: 373 PVIVXXXXXXXXXXXXXXDVGGACVLSA 456
PVIV VGGACVL A
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVGGACVLVA 148
>AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ44237 fis, clone THYMU3007845. ).
Length = 139
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/43 (27%), Positives = 15/43 (34%)
Frame = +3
Query: 327 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWCLCTIC 455
+W L Q PQ + L R + C WC C C
Sbjct: 71 AWFLSPVHHSQIPQLAACPLQSLRLSKPRSPGRCCAWCGCLNC 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,133,305
Number of Sequences: 237096
Number of extensions: 1291118
Number of successful extensions: 2775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2774
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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