Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30418
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   2.1  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   2.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   2.8  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.7  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   8.5  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 678 ILPRCLKRGHCKHKEQFYESSRVQSREKLEHY 583
           I P+ L+ G C+  +  YE  R+    +L HY
Sbjct: 651 IFPQILETGKCRWSDCKYEIQRLTPASELSHY 682


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 246 NQLKPRNKKLRKQIVDF 196
           N LKPR  +LR Q+VDF
Sbjct: 400 NLLKPRKHRLRVQVVDF 416


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 155 DCSSVATPGSSIVNEPKNINR 93
           +CS  A+P SSIVN P+ + +
Sbjct: 229 ECSQFASPRSSIVNGPRTLGK 249


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 245 TNLNPVIKSYVSKLLTLNREGLKAVEVVNQD 153
           + LNP +K+Y+ +L  L ++  K + +V+Q+
Sbjct: 445 SRLNPALKNYMEELKLLEQQNKKRLLLVSQE 475


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 140 ATPGSSIVNEPKNINRTKSAETQISLEQIKHIVKQK 33
           ATPGS  ++  +   +  S +TQ+  E +  ++K+K
Sbjct: 373 ATPGSQFISAEEMNQKYISEQTQLVEEALTKVMKEK 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,852
Number of Sequences: 5004
Number of extensions: 52701
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)