Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30418
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1252 + 25595776-25596564                                         28   6.7  
01_02_0058 - 10699702-10700517,10700997-10701206                       28   6.7  
11_04_0354 + 16697571-16700256,16700335-16700759                       28   8.9  

>08_02_1252 + 25595776-25596564
          Length = 262

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 720 SSSTSTAYMSPPELILPRCLKRGHCKH 640
           SSS+STA  + P L+ PR   R  C H
Sbjct: 126 SSSSSTAASAAPPLVRPRLPSRRRCLH 152


>01_02_0058 - 10699702-10700517,10700997-10701206
          Length = 341

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 245 TNLNPVIKSYVSKLLTLNR-EGLKAVEVVNQDCSSVATPGSSIVN-EPKNINRTKSAETQ 72
           + +  V+KS+V K + LNR  G   V ++  DC      GS +++    N    K A   
Sbjct: 35  SGVEDVVKSHVIKAIILNRGNGAALVRLIFHDCFVRGCDGSVLLDASGVNPRPEKVAPVS 94

Query: 71  ISLE 60
           I LE
Sbjct: 95  IGLE 98


>11_04_0354 + 16697571-16700256,16700335-16700759
          Length = 1036

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -1

Query: 270  IKIGLLCSNQLKPRNKKLRKQIVDFK*GRIKSC*GSQSRLQFCSHTRKL 124
            +KI L CS Q      ++R    D +  R     G++  L+ CS    L
Sbjct: 985  MKIALSCSRQAPTERMRIRDAAADLRRVRDSHVRGNEEHLELCSDVTNL 1033


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,177
Number of Sequences: 37544
Number of extensions: 286322
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)