Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30418
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27863| Best HMM Match : rve (HMM E-Value=4.7e-35) 32 0.42
SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) 30 2.3
SB_41911| Best HMM Match : PAN (HMM E-Value=0.00033) 30 2.3
SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_40569| Best HMM Match : TPR_2 (HMM E-Value=2.8e-34) 28 6.9
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 28 9.1
SB_46904| Best HMM Match : Pentaxin (HMM E-Value=0.13) 28 9.1
>SB_27863| Best HMM Match : rve (HMM E-Value=4.7e-35)
Length = 742
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 468 LVQSL*HTESLDFRTFFYWESVYIFYSCNCILRYNDVDRNVQVFPDFEHETTHR 629
L+ L + + DFRT F+W++ + +S N I+ + V D E THR
Sbjct: 510 LISELSNYATWDFRTLFFWDTRGVLFSINIIVFSYSIQ---AVVIDIEESMTHR 560
>SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1392
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 468 LVQSL*HTESLDFRTFFYWESVYIFYSCNCILRYNDVDRNVQVFPDFEHETTHR 629
L+ L + + DFRT F+W++ + +S N I+ + V D E THR
Sbjct: 1160 LISELSNYATWDFRTLFFWDTRGVLFSINIIVFSYSIQ---AVVIDIEESMTHR 1210
>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 490 QNLWISGHFFIGNLYTSFTAATVFFVIMMLIVMFKF 597
QN+W H ++ N+Y F V FV M IV+ +
Sbjct: 67 QNVWFLDHDYLENMYAMFKKVNVGFVDMSFIVLHPY 102
>SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 468 LVQSL*HTESLDFRTFFYWESVYIFYSCNCILRYNDVDRNVQVFPDFEHETTHR 629
L+ + + + DFRT F+W++ + +S N I+ + V D E THR
Sbjct: 149 LISEVSNYAAWDFRTLFFWDTRGVLFSINIIVFSYSIQ---AVVIDIEESMTHR 199
>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
Length = 227
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 269 IFQVIYRLQRLFSYIICIMSVKTFFRVSRNLILVFIE 379
+F++I RL++ S IICI +T R+ + LVF E
Sbjct: 78 LFKLIVRLEKSKSSIICINCYRTLERIEKAKSLVFRE 114
>SB_41911| Best HMM Match : PAN (HMM E-Value=0.00033)
Length = 390
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 343 KKCLNRHNTDNVTKKPLQSVYNLKYKDRPTLFK 245
K CL+ + N KP + VY + D TLFK
Sbjct: 172 KSCLDFYKAPNARIKPTRGVYTIFKNDNSTLFK 204
>SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 548 AVKDVYRFPIKKCPEIQRFCML 483
AVK++ RFPIK CP+I +L
Sbjct: 340 AVKNLLRFPIKLCPDILLLALL 361
>SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/33 (33%), Positives = 24/33 (72%)
Frame = -2
Query: 119 VNEPKNINRTKSAETQISLEQIKHIVKQKILNE 21
+++ KNI++ K+ + Q ++Q KHI +QK +++
Sbjct: 580 IDQQKNIDQQKNIDQQKHIDQQKHINQQKHIDQ 612
>SB_40569| Best HMM Match : TPR_2 (HMM E-Value=2.8e-34)
Length = 330
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 654 GHCKHKEQFYESSRVQSREKLEHYDQHHYN 565
G+ K ++FYESS +S+++ H D+ +YN
Sbjct: 262 GNLKEAKRFYESSLDRSKQE-SHNDESYYN 290
>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 654 GHCKHKEQFYESSRVQSREKLEHYDQHHYN 565
G+ K ++FYESS +S+++ H D+ +YN
Sbjct: 397 GNLKEAKRFYESSLDRSKQE-SHNDESYYN 425
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 414 KNVQRKTHRQQNSIKTRIKFLETLKNVLTDIIQIM 310
KN + + S + RI LET KN+LT+ ++I+
Sbjct: 547 KNEKESLEHELGSARGRIDDLETKKNLLTEQLEIL 581
>SB_46904| Best HMM Match : Pentaxin (HMM E-Value=0.13)
Length = 323
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Frame = -2
Query: 254 FVQTNLNPVIKSYVSKLLTLNREGLKA-VE-------VVNQDCSSVATP 132
F+ ++N V KS+V+ +L L+ G+K+ V+ V+ QD SVATP
Sbjct: 151 FLWNSVNGVYKSFVNGILKLSATGMKSGVKIGGGGSLVLGQDQDSVATP 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,298,522
Number of Sequences: 59808
Number of extensions: 357991
Number of successful extensions: 1103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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