Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30418
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97404-2|AAB93309.1|  795|Caenorhabditis elegans Acid-sensing/am...    33   0.21 
Z48334-8|CAE17779.1|  176|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    28   7.9  

>U97404-2|AAB93309.1|  795|Caenorhabditis elegans
           Acid-sensing/amiloride-sensitiveion channel family
           protein 1 protein.
          Length = 795

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 522 WESVYIFYS-CNCILRYNDVDRNVQVFPDFEHETTHRIVLCVYNVHVSDIW 671
           +E +   YS CNC  ++  V  +V   PD + E +++  LC YN     IW
Sbjct: 356 YEGLLAVYSHCNCTKQHGCVSTSV---PDMDLENSNKTCLCFYNKKNEQIW 403


>Z48334-8|CAE17779.1|  176|Caenorhabditis elegans Hypothetical
           protein F10B5.9 protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 529 LYTSFTAATVFFVIMMLIVMFKFFPTL 609
           L+ SFTA  VF + ++ IV+F+F PT+
Sbjct: 54  LFVSFTATFVFQLGLIHIVIFQFLPTV 80


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 511 HFFIGNLYTSFTAATVFFVIMMLIVMFKFFPTLNTRRLI 627
           HF+   L  +F +   FFV+  L++ + FF T   +++I
Sbjct: 296 HFWNHLLLNAFVSVDTFFVLSGLVLTYMFFKTTPKKKMI 334


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 603 DFEHETTHRIVLCVYNVHVSDIWVGLIQVDSCKR*TWKNSYEKI 734
           D  HE  H I+LC+Y +    + + L  V  C +  W + + KI
Sbjct: 262 DIPHEYFHNIILCIYTIPYGGLCLPL-SVIYCTK--WISDHRKI 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,057
Number of Sequences: 27780
Number of extensions: 294294
Number of successful extensions: 1014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)