Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30418
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone... 29 4.3
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge... 28 5.6
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge... 28 5.6
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge... 28 5.6
At5g66310.1 68418.m08360 kinesin motor family protein contains P... 28 7.4
At5g16890.1 68418.m01980 exostosin family protein contains Pfam ... 28 7.4
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone... 28 7.4
At1g43160.1 68414.m04973 AP2 domain-containing protein RAP2.6 (R... 28 7.4
At4g22430.1 68417.m03241 hypothetical protein 27 9.8
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 27 9.8
At2g01980.1 68415.m00133 sodium proton exchanger, putative (NHX7... 27 9.8
>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1025
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 254 FVQTNLNPVIKSYVSKLLTLNREGLKAVEVVNQDCSSVATPGSSIVNE 111
F Q + VI+S+ S L + L++ +V +D + SSI+NE
Sbjct: 513 FTQPKMYKVIRSHPSSLQIYQEKLLQSGQVTQEDIDKIQKKVSSILNE 560
>At2g39730.3 68415.m04879 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 441
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 215 VSKLLTLNREGLKAVEVVNQDCSSVATPGSSIVNEPKNINRTKSAETQIS 66
+ K L +REG E + G+ +V E +N+ R + AET +S
Sbjct: 369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
>At2g39730.2 68415.m04878 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 446
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 215 VSKLLTLNREGLKAVEVVNQDCSSVATPGSSIVNEPKNINRTKSAETQIS 66
+ K L +REG E + G+ +V E +N+ R + AET +S
Sbjct: 369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
>At2g39730.1 68415.m04877 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 474
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 215 VSKLLTLNREGLKAVEVVNQDCSSVATPGSSIVNEPKNINRTKSAETQIS 66
+ K L +REG E + G+ +V E +N+ R + AET +S
Sbjct: 369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
>At5g66310.1 68418.m08360 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1063
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -1
Query: 642 HKEQFYESSRVQSREKLEHYDQHHYNEEYSCSCKRCIQIPNKKMSGNP 499
HKE+ E VQ E + N E +C RCI+ +S P
Sbjct: 533 HKEEAIEEPHVQEERFYEMAEHTDGNSEDNCREVRCIETEKSDISIGP 580
>At5g16890.1 68418.m01980 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 511
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 541 KMYTDSQ*KNVRKSRDSVCYKDCTKSKHTPSNTSSCLSS 425
K++T + V+ SR S+C DC +S T SN+ S L S
Sbjct: 474 KLHTRRSQRVVKGSR-SICRCDCWRSNSTASNSLSSLLS 511
>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1017
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 254 FVQTNLNPVIKSYVSKLLTLNREGLKAVEVVNQDCSSVATPGSSIVNE 111
F Q + VIK++ S L +++ L+ EV QD + ++I+NE
Sbjct: 509 FTQPKMYKVIKNHPSTLQIYHKKLLECGEVSQQDIDRIQEKVNTILNE 556
>At1g43160.1 68414.m04973 AP2 domain-containing protein RAP2.6
(RAP2.6) identical to AP2 domain containing protein
RAP2.6 GI:2281637 from [Arabidopsis thaliana]
Length = 192
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = -1
Query: 426 HIGTKNVQRKTHRQQNSIKTRIKFLETLKNVLT 328
++GT+ +QR +H QNS++ + +++ +L+
Sbjct: 119 NVGTQTIQRNSHFLQNSMQPSLTYIDQCPTLLS 151
>At4g22430.1 68417.m03241 hypothetical protein
Length = 348
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 219 TFYYGV*VGLNKVGLSLYFKLYTDCNGFL 305
TF+ GV G+++VG+ L FK+ N FL
Sbjct: 78 TFFCGVVTGVDEVGVVLSFKVVKSGNMFL 106
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 167 VVNQDCSSVATPGSSIVNEPKNINRTKSAETQISLEQI 54
+VNQ +S P V +P N +T SAET+ S ++I
Sbjct: 362 LVNQKVTSPVMPSQPPVAQPGNHAKTVSAETEPSDDRI 399
>At2g01980.1 68415.m00133 sodium proton exchanger, putative (NHX7)
(SOS1) identical to putative Na+/H+ antiporter SOS1
[Arabidopsis thaliana] gi|8515714|gb|AAF76139; Member of
The Monovalent Cation:Proton Antiporter (CPA1) Family,
PMID:11500563
Length = 1146
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 414 LCLCELRQLDVFEGVCLDLVQSL*HTESLDFRTFFYWESVYIFYSCNCI 560
L L +L + +FE V + +++L TES T+ ES+ I CN I
Sbjct: 859 LVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVTGESIEI--DCNSI 905
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,585,630
Number of Sequences: 28952
Number of extensions: 259294
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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