Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30417
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    60   3e-09
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 44   1e-04
SB_19373| Best HMM Match : MFS_1 (HMM E-Value=3.36312e-44)             31   0.83 
SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)                 31   1.4  
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)                  30   2.5  
SB_50863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_25744| Best HMM Match : MFS_1 (HMM E-Value=9.7e-23)                 29   3.3  
SB_11193| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_8905| Best HMM Match : FYVE (HMM E-Value=0.13)                      29   4.4  
SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)                    28   7.7  
SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)                 28   7.7  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 31/87 (35%), Positives = 49/87 (56%)
 Frame = +2

Query: 275 LYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWI 454
           L  ES+ES +  T  QGSW  S++ L + L      +  + FGRK T++  A+PF +GW+
Sbjct: 72  LIAESKES-VKLTVSQGSWFSSLVTLGAILGAPLGGWTLEYFGRKGTIMACAVPFEVGWM 130

Query: 455 LVIVAKSLPMLYVARIFSAWVMELYTL 535
           L+  A S  MLY+ R  +   + + +L
Sbjct: 131 LIAYANSHYMLYIGRFITGLAVGMVSL 157



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 26/83 (31%), Positives = 43/83 (51%)
 Frame = +1

Query: 511 LGYGVVYTVAPMYTGEIATNEVRGALSTLITLMNKVGILAQYCIGPFVSMRTLASINLIL 690
           L  G+V    P+Y  EI++  +RG L ++  L   +G+L  Y +G  +  R LA    I 
Sbjct: 150 LAVGMVSLTVPVYIAEISSPSLRGMLGSVNQLAVTMGLLLAYSMGVVLKWRWLACSGAIF 209

Query: 691 PFTFIITFCFLPESPYYYLKFER 759
           P   ++   F+PE+P + L  +R
Sbjct: 210 PALLVVLMFFVPETPRWSLSHKR 232


>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +2

Query: 245 YLLRWPSPTLLYLESEESS-IPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLL 421
           Y + + S     LE++ ++ +   A + +W  S++ + + L      +L D  GRK  L+
Sbjct: 56  YCMGYSSAATTQLENKNATDLYLNADEITWFGSLLNIGAMLGGPIQGFLIDLIGRKFALI 115

Query: 422 LGAIPFIIGWILVIVAKSLPMLYVARIFS 508
           L ++PF  GW+L+   K+  ML   R  S
Sbjct: 116 LTSVPFCSGWLLIGFGKNAAMLNAGRFMS 144



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +1

Query: 478 ANAVRRANFLS-LGYGVVYTVAPMYTGEIATNEVRGALSTLITLMNKVGILAQYCIGPFV 654
           A  +    F+S LG G+     P+Y  E A+   RGA+ ++  L    GIL  Y IG   
Sbjct: 134 AAMLNAGRFMSGLGVGMASLNVPVYISETASFSNRGAMGSINQLGITAGILISYAIGYAF 193

Query: 655 SMRTLASINLILPFTFIITFCFLPES 732
             R  A          ++   F+PE+
Sbjct: 194 DWRWSAVAGSFPAALLVVLMAFMPET 219


>SB_19373| Best HMM Match : MFS_1 (HMM E-Value=3.36312e-44)
          Length = 472

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +2

Query: 281 LESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILV 460
           LE   +S+  TA  GS  +++    + L    +  L D++GR+     G +   +G  L 
Sbjct: 53  LEHFNASLERTALVGSLAIAMTFTATLL----AGRLIDRYGRRIVSFAGGLTCALGLTLT 108

Query: 461 IVAKSLPMLY 490
             A S+ MLY
Sbjct: 109 SFAHSINMLY 118


>SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)
          Length = 499

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +2

Query: 308 TTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPML 487
           TTA+ GS  +++ I    L P+  A L + FG +T  +  ++   +G  +     SLP++
Sbjct: 70  TTAWVGSLALALSI---GLGPV-FAKLINSFGARTVTICASVVSAVGLFVTSQVNSLPLM 125

Query: 488 YV 493
           Y+
Sbjct: 126 YL 127


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 326 SWIVSIMI-LCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLYV 493
           +WI S+   L   L P+ ++ L  K+G ++  +LGAI F +G      A SL  +YV
Sbjct: 58  AWIASLSFSLTFMLGPLTTS-LCTKYGVRSVAVLGAILFALGLFCSSFAGSLFKMYV 113


>SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 311 TAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLY 490
           TA+ G+  + +  LC  LT I    L  ++  + T  +GA+  ++G  L    +  P +Y
Sbjct: 78  TAWIGAMAMGLNFLCGPLTSI----LCTRYSCQATAFIGALLSVLGLFLTSFVQEPPKMY 133

Query: 491 V 493
           +
Sbjct: 134 L 134


>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
          Length = 201

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 505 LSLGYGVVYTVAPMYTGEIATNEVRGALSTLITLMNKVGILAQYCIG 645
           + +  G+   +AP+Y  E+A   +RG+L TL    N+ GI++   +G
Sbjct: 53  IGINCGMNTAIAPIYLSELAPIHLRGSLGTL----NQFGIVSGLLVG 95


>SB_50863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +2

Query: 383 YLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPML 487
           ++ D  GR+  +++ ++ F+ G I++ VA+S P+L
Sbjct: 2   FVIDFLGRRLAIIITSLVFLAGAIILAVAQSYPVL 36


>SB_25744| Best HMM Match : MFS_1 (HMM E-Value=9.7e-23)
          Length = 403

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 314 AYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLYV 493
           AY+ +W+ S+         I    L  ++G + T + G     I ++    + SL +LYV
Sbjct: 54  AYRYAWVTSLASGFKHFLAIICTLLVQRYGSRATAIAGGFVCAIAFLSSAYSPSLELLYV 113


>SB_11193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/61 (26%), Positives = 35/61 (57%)
 Frame = +2

Query: 311 TAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLY 490
           TA+ GS  ++ + L S +T    + +A+++G +T  +LG +   +G  L   A ++ ++Y
Sbjct: 90  TAWVGSIGLNFLFLGSPVT----SRVAERYGIRTVTILGGVFISLGLFLTSYAPNIVVIY 145

Query: 491 V 493
           +
Sbjct: 146 I 146


>SB_8905| Best HMM Match : FYVE (HMM E-Value=0.13)
          Length = 687

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +1

Query: 520 GVVYTVAPMYTGEIATNEVRGALSTLITLMNKVGILAQYCIGPFVSMRTLASINLILPFT 699
           G +YT  PM  G   T  + G L+T   +   +        GP+ +      +N   P T
Sbjct: 536 GGLYTTTPMTGGLYTTTPMTGVLNTTTPMTGGLNTTTPMTGGPYTTAPMTRGLNTTTPMT 595


>SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)
          Length = 195

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 311 TAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLY 490
           T    +W+ SI    S      SA+   +FG + T ++G +   +  I+   A  L M+Y
Sbjct: 57  TRENAAWVGSIAYSMSYFCAPLSAWCCVRFGCRRTAIVGTLTCAVSLIISSFAPGLLMMY 116


>SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 495 REFSQPGLWSCIHCGSDVYRRDS 563
           R+++Q   + C+HC  + YR+D+
Sbjct: 245 RKYNQEKEYKCLHCAREFYRKDN 267


>SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)
          Length = 607

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 326 SWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLY 490
           +W+ S+ +  +      SA+L  +FG + T +LG     +   L   A  L +LY
Sbjct: 78  AWVTSLAVSLNLTFGPLSAFLCQRFGCRVTAMLGGGICAVSLFLSAFAVDLYLLY 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,196,049
Number of Sequences: 59808
Number of extensions: 440915
Number of successful extensions: 1018
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)