Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30417
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +2

Query: 200 IWNSIMCDPHYCNSRYLLRWPSPTLLYLESEESSIPTTAYQGSWIVSI 343
           +W   +   +  +  Y +R+ S  L+Y   +   +P   YQ S  + +
Sbjct: 108 VWKPDIVLFNNADGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDV 155


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 593 VDRAPRTSFVAISPVYIGATVYTTP 519
           V R PR   V +S V++GA   + P
Sbjct: 151 VKRTPRRMIVYVSLVWLGAACISLP 175


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 143 NIFILIQQNGSKNSFTLEGIWNSIMCDPHYCNSRYLLR 256
           +I     Q  +K+S+T+ G+  +I    H+C   Y ++
Sbjct: 433 SIIFANNQPYTKDSYTVAGMGETIEDLLHFCRQMYAMK 470


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 319 PRIMDSLNNDTLLGSNTDPIRLSRRQIRKKNY 414
           P+I+ SL+N T+  +N      +       NY
Sbjct: 312 PKIISSLSNKTIHNNNNYKYNYNNNNYNNNNY 343


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 372  SHPPISPTNSEEKLH 416
            ++P I+P N  EKLH
Sbjct: 1473 TYPRINPDNHNEKLH 1487


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 319 PRIMDSLNNDTLLGSNTDPIRLSRRQIRKKNYTASRSYTLHN 444
           P+I+ SL+N+T + +N      +       NY     Y + N
Sbjct: 78  PKIISSLSNNT-IHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 319 PRIMDSLNNDTLLGSNTDPIRLSRRQIRKKNYTASRSYTLHN 444
           P+I+ SL+N+T + +N      +       NY     Y + N
Sbjct: 78  PKIISSLSNNT-IHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 123 YCAIWNEII 97
           YCA WNE +
Sbjct: 573 YCAFWNEFL 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,791
Number of Sequences: 438
Number of extensions: 4768
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)