Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30416
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    54   2e-08
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    33   0.032
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    29   0.53 
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.9  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    26   6.5  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   8.6  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   8.6  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
 Frame = +2

Query: 239 REGLLRFQGIPYAKPPLGSLRFKAPQSPEP-WDGIRDATAEGNVCAQ------IDPVFAK 397
           +E   RF GI YAKPP+G LR++ P + E  +D   D      +C Q       + V   
Sbjct: 15  KEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNP 74

Query: 398 SYVGDENCLFLNVYTPSTD--GAFLPVMIWIHGGGFKWG 508
            +  DE+CLFLN++ P+ +      PV+ +IHGG  + G
Sbjct: 75  DFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVG 113



 Score = 32.7 bits (71), Expect = 0.056
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +1

Query: 559 VVMTINYRCGALGFLS----LNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFG 726
           ++++  +R    GFL+    L       N G  D    + W   +I  FGGN  N+ + G
Sbjct: 136 ILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGG 195

Query: 727 ESAG 738
            SAG
Sbjct: 196 ISAG 199


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 114 FPTMISAVNEFLDDLRGGRMSESPLVTVEQGQLQGRIVNSPSGKAFYVSKE 266
           F T+I A+  F++ L  G+  ++      +G  Q R +++  G+A YV+KE
Sbjct: 509 FRTLIDAIQPFVETLNEGKGLDAAAKAATEGSEQTRKMDAVVGRASYVAKE 559


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 269 PYAKPPLGSLRFKAPQSPEPWDGIRDATAEGNVCAQIDPV 388
           P   P  G      P+SP  + G+ DA+ EGN    ID +
Sbjct: 3   PSTPPMRGLCTPSTPESPGSFKGVIDASLEGNSSIMIDEI 42


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = +1

Query: 493 WVQVGTGNTNLYGPDFLVDRDVVVMTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWV 672
           WV       N +          VV+ ++YR           PE P  A I D  +A+ + 
Sbjct: 111 WVLGNINTENSFATHMCEQAKCVVVNVDYRLA---------PEDPFPACIDDGWEALLYC 161

Query: 673 KDNIHHFGGNAGNLTIFGESAG 738
            +N    G N   + + G SAG
Sbjct: 162 YENADTLGINPNKIAVGGSSAG 183


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 227  KQPVR--EGLLRFQGIPYAKPPLGSL 298
            KQPVR  +  LRF  +P  KP L SL
Sbjct: 2401 KQPVRLTDNSLRFAPVPMTKPILSSL 2426


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 616 PEVPGNAGIKD-IVQAIRWVKDNIHHFGGNA 705
           P +P  + + D ++ ++R V  +I HFGG+A
Sbjct: 362 PSIPKVSVMDDTLIDSVRGVPGDISHFGGDA 392


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 345 MPRRKGTCVLKSIQSSRNPMSAMKTAC 425
           +PR  G CVL      RNP S +  +C
Sbjct: 431 LPREWGYCVLDEGHKIRNPDSEISISC 457


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 326 PWDGIRDATAEGNVCAQIDPVFAKSYVGDENCLFL 430
           P + IRD     N   ++DP FAK+YV     LF+
Sbjct: 449 PAECIRDC----NKAIELDPNFAKAYVRKAQALFM 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,988
Number of Sequences: 5004
Number of extensions: 79701
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)