Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30416
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 37 0.012
At5g15860.2 68418.m01856 expressed protein 36 0.028
At5g15860.1 68418.m01855 expressed protein 36 0.028
At5g23530.1 68418.m02761 expressed protein contains similarity t... 35 0.049
At1g26120.1 68414.m03188 esterase-related contains similaity to ... 33 0.20
At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin... 32 0.46
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin... 32 0.46
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 30 1.9
At3g58830.1 68416.m06557 haloacid dehalogenase (HAD) superfamily... 29 3.2
At3g23710.1 68416.m02981 chloroplast inner membrane import prote... 29 3.2
At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin... 29 4.3
At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar... 28 5.7
At3g52250.1 68416.m05742 myb family transcription factor contain... 28 5.7
At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pin... 28 5.7
At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pin... 28 5.7
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 28 7.5
At2g03550.1 68415.m00315 expressed protein similar to PrMC3 [Pin... 28 7.5
At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar t... 28 7.5
At5g61300.1 68418.m07692 expressed protein 27 9.9
At5g13100.1 68418.m01501 expressed protein 27 9.9
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 27 9.9
At1g58227.1 68414.m06616 hypothetical protein 27 9.9
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +1
Query: 541 LVDRDVVVMTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTI 720
L +RD++V ++YR N P+ + + D Q I +V +NI FGG+ + +
Sbjct: 176 LAERDIIVACLDYR---------NFPQGTISDMVSDAAQGISFVCNNISAFGGDPNRIYL 226
Query: 721 FGESAG 738
G+SAG
Sbjct: 227 MGQSAG 232
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 35.9 bits (79), Expect = 0.028
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +1
Query: 541 LVDRDVVVMTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTI 720
L +RD++V ++YR N P+ + + D Q I +V +NI FGG+ + +
Sbjct: 181 LAERDIIVACLDYR---------NFPQGTISDMVTDASQGISFVCNNISAFGGDPNRIYL 231
Query: 721 FGESAG 738
G+SAG
Sbjct: 232 MGQSAG 237
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 35.9 bits (79), Expect = 0.028
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +1
Query: 541 LVDRDVVVMTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTI 720
L +RD++V ++YR N P+ + + D Q I +V +NI FGG+ + +
Sbjct: 181 LAERDIIVACLDYR---------NFPQGTISDMVTDASQGISFVCNNISAFGGDPNRIYL 231
Query: 721 FGESAG 738
G+SAG
Sbjct: 232 MGQSAG 237
>At5g23530.1 68418.m02761 expressed protein contains similarity to
PrMC3 [Pinus radiata] GI:5487873
Length = 335
Score = 35.1 bits (77), Expect = 0.049
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 377 IDPVFAKSYVGDENC-LFLNVYTPSTDGAFLPVMIWIHGGGF 499
++ V +V D++ L+ +YTP G +PV+++ HGGGF
Sbjct: 57 VNIVSTSDFVVDQSRDLWFRLYTPHVSGDKIPVVVFFHGGGF 98
>At1g26120.1 68414.m03188 esterase-related contains similaity to
esterase 6 GI:606998 from [Drosophila simulans] and
esterase GI:12584120 from [Sphingomonas elodea]
Length = 476
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +1
Query: 541 LVDRDVVVMTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTI 720
L +RD++V I+YR N P+ + +KD I +V ++I +GG+ + +
Sbjct: 232 LSERDIIVACIDYR---------NFPQGSISDMVKDASSGISFVCNHIAEYGGDPDRIYL 282
Query: 721 FGESAG 738
G+SAG
Sbjct: 283 MGQSAG 288
>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 386 VFAKSYVGDENCLFLNVYTP--STDGAFLPVMIWIHGGGFKWG 508
+F S N L L +Y P +++ LPV+++ HGGGF +G
Sbjct: 48 LFKDSIYHKPNNLHLRLYKPISASNRTALPVVVFFHGGGFCFG 90
>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 386 VFAKSYVGDENCLFLNVYTP--STDGAFLPVMIWIHGGGFKWG 508
+F S N L L +Y P +++ LPV+++ HGGGF +G
Sbjct: 48 LFKDSIYHKPNNLHLRLYKPISASNRTALPVVVFFHGGGFCFG 90
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 116 SNNDIGRERIPR*SSWWQDVRVASSHSGARAAPGTDRKQPVREGLLRFQGIP 271
SNN + +E+ D VA+S S + + PGT+ ++ V L F+ +P
Sbjct: 1238 SNNSMNKEKQKADEEEEDDAEVAASLSLSLSFPGTEERKNVNTPLFLFRDLP 1289
>At3g58830.1 68416.m06557 haloacid dehalogenase (HAD) superfamily
protein contains TIGRfam TIGR01668: HAD superfamily
(subfamily IIIA) phosphatase, TIGR01668 and TIGR01662:
hydrolase, HAD-superfamily, subfamily IIIA
Length = 343
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 234 PSGKAFYVSKEYHMRNPHWVLCDLRP-HNLQNPGTASGMPRRKGTCVLKSIQSSRNP 401
P K+F +S H RNP+ + C +P + P ++S P + T Q+ R P
Sbjct: 10 PIPKSFLLSPPRHKRNPNLISCSTKPICSPPPPSSSSSSPLQTTTTHRSQKQNLRLP 66
>At3g23710.1 68416.m02981 chloroplast inner membrane import protein
Tic22, putative similar to Tic22 [Pisum sativum]
gi|3769671|gb|AAC64606; contains Pfam domain PF04278:
Tic22-like family
Length = 313
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 27 LSHECSE*IKHLCNELNKILINNSGVNNEFPTMISAVNEFLDDLR 161
L +CS + ++ LN + N+ NN P + SA+N F D +
Sbjct: 25 LQSQCSNLLLNVSQTLNPLF--NANTNNNKPNIFSALNSFRDQAK 67
>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 416 NCLFLNVYTPSTDGAF----LPVMIWIHGGGFKWGPAIPTC 526
N + VY P A LP++++ HGGGF G A +C
Sbjct: 72 NDTWTRVYIPDAAAASPSVTLPLLVYFHGGGFCVGSAAWSC 112
>At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar to
Acylamino-acid-releasing enzyme (EC 3.4.19.1)
(Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase)
(Swiss-Prot:P13676) [Rattus norvegicus]; annotated with
nonconsensus TT and CT acceptor splice sites.
Length = 764
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 565 MTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAG 738
+ INYR G+LG+ +PG G +D+ + V I + +T+ G S G
Sbjct: 564 LIINYR-GSLGYGEDALQSLPGKVGSQDVKDCLLAVDHAIEMGIADPSRITVLGGSHG 620
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 54 KHLCNELNKILINNSGVNNEFPTMIS 131
K+LC + + L+NN+ VN FP+++S
Sbjct: 1244 KYLCLKDDNNLVNNAYVNGGFPSLVS 1269
>At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 336
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 422 LFLNVYTPSTDGAFLPVMIWIHGGGFKWGPAIPTC 526
L++ + T + + LP++++ HGGGF G A C
Sbjct: 75 LYVPMTTTKSSVSKLPLIVYFHGGGFCVGSASWLC 109
>At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 314
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +2
Query: 332 DGIRDATAEGNVCAQ-IDP---VFAKSYVGDENC-LFLNVYTPST--DGAFLPVMIWIHG 490
DG + A VC +DP VF+K + + L +Y P + G +P+M++ HG
Sbjct: 21 DGTVERLAGTEVCPPGLDPITGVFSKDIIIEPKTGLSARIYRPFSIQPGQKIPLMLYFHG 80
Query: 491 GGF 499
G F
Sbjct: 81 GAF 83
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 454 WSIPPGHDLDPRWWVQVGTGNT 519
W +PPG +LD W V G GN+
Sbjct: 587 WHVPPGMELDELWRVAAG-GNS 607
>At2g03550.1 68415.m00315 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873; contains an
esterase/lipase/thioesterase active site serine domain
(prosite: PS50187)
Length = 312
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 413 ENCLFLNVYTPS-TDGAFLPVMIWIHGGGF 499
E L L +Y P LP++I+ HGGGF
Sbjct: 50 EKNLSLRIYLPEKVTVKKLPILIYFHGGGF 79
>At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar to
fumarylacetoacetase (Fumarylacetoacetate hydrolase,
Beta-diketonase, FAA)[Rattus norvegicus]
SWISS-PROT:P25093
Length = 421
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 297 CDLRPHNLQNPGTASGMPRRKGTCVLKSIQSSRNPMS 407
C+LRP +L GT SG C+L+ + + P+S
Sbjct: 343 CNLRPGDLLGTGTISGPEPDSYGCLLELTWNGQKPLS 379
>At5g61300.1 68418.m07692 expressed protein
Length = 557
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 565 SPRHLCQLENLVHTSWYCRSPLEPTTVDPNHDREECSISARGVH 434
SP CQ EN + + SP E ++ RE S S G H
Sbjct: 227 SPGEECQAENGIDLNMSPLSPEEEVPIESEQPRELVSASLHGKH 270
>At5g13100.1 68418.m01501 expressed protein
Length = 354
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 404 VGDENCLFLNVYTPSTDGAFLPVMIWIHGGGFKWGPA 514
V +ENC+F + P ++ +PV +++ G G+ G A
Sbjct: 295 VEEENCVFFLPHKPRSEVLEVPVFLFMKGTGWCGGGA 331
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 308 P*IAKNPMGVSHMVFLGNVEGLPGR 234
P +P+G S M +GNV LPGR
Sbjct: 106 PYSGSHPLGASPMGSVGNVHALPGR 130
>At1g58227.1 68414.m06616 hypothetical protein
Length = 1323
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +3
Query: 21 LFLSHECSE*IKHLCNELNKILINNSGVNNEFPTMISAVNEFLDDLRGGRMSESPLVTVE 200
+FLSH C + + +L ++++L+ G FP + + +E L L G R E P + ++
Sbjct: 1241 IFLSHPCRDNVLYLLRLVDEMLVREFGSRLLFPAISTDFSEDLLQL-GNR--EDPTLGLD 1297
Query: 201 Q 203
+
Sbjct: 1298 E 1298
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,338,141
Number of Sequences: 28952
Number of extensions: 447704
Number of successful extensions: 1136
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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