Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30415
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   116   2e-27
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   116   2e-27
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    40   2e-04
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   1.7  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.0  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   7.0  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   9.3  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  116 bits (280), Expect = 2e-27
 Identities = 53/84 (63%), Positives = 69/84 (82%)
 Frame = +2

Query: 2   AVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDI 181
           +VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDI
Sbjct: 3   SVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDI 62

Query: 182 RVTVKGGGHVAQVYAIRQAISKAL 253
           RV V GGGHV+Q+YAIRQAISKA+
Sbjct: 63  RVRVSGGGHVSQIYAIRQAISKAI 86



 Score = 87.8 bits (208), Expect = 9e-19
 Identities = 40/53 (75%), Positives = 45/53 (84%)
 Frame = +1

Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
           A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 88  AYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  116 bits (280), Expect = 2e-27
 Identities = 53/84 (63%), Positives = 69/84 (82%)
 Frame = +2

Query: 2   AVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDI 181
           +VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDI
Sbjct: 3   SVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDI 62

Query: 182 RVTVKGGGHVAQVYAIRQAISKAL 253
           RV V GGGHV+Q+YAIRQAISKA+
Sbjct: 63  RVRVSGGGHVSQIYAIRQAISKAI 86



 Score = 87.8 bits (208), Expect = 9e-19
 Identities = 40/53 (75%), Positives = 45/53 (84%)
 Frame = +1

Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
           A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 88  AYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 38/79 (48%)
 Frame = +2

Query: 17  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 196
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 197 GGGHVAQVYAIRQAISKAL 253
           GGG   Q  A+  AISK+L
Sbjct: 71  GGGPTGQSGAVHAAISKSL 89


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 395 DTRNLTVKPSTKPSGGIVAAVCCH 466
           D  N+ VKP+  P+  +   +CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 205 SCSTSLRYQTSYFEGSDAFYQKYVDEASKKEIKDILVQYDRSLL 336
           +C+T      S  E SD   +  ++ +   E++D + +YD  +L
Sbjct: 234 ACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDVRVL 277


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 151 RQGKILYGRHQSDSQGWWSCSTSLRYQTSYFEGSDAFYQKYVDEASKKEIKDILVQYDRS 330
           +Q +I+Y  H+ D +     +TSLR + S +E +D+F       A+  +       Y++ 
Sbjct: 90  KQREIIYELHK-DLEKVKKDNTSLRMRLSKYESTDSFPSSQPSRANSPQSDSYSSPYEKG 148

Query: 331 LL 336
            L
Sbjct: 149 KL 150


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 235 LSDSVNLCYMTTTLDCHSDV-DHREFFLAEQ 146
           LS+  N CYM + L C +   + R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 83   RLHAAFHDHACNTQLRWRFS 24
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 122 TAAVWAQPSPMDARLHAAFHDHACNTQLR 36
           T +V  +  P  AR  AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,016
Number of Sequences: 5004
Number of extensions: 39696
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)