Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30415
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 111 3e-25
11_01_0155 - 1287003-1287452 111 3e-25
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.004
03_06_0097 - 31632238-31632525,31633386-31633769 36 0.020
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 29 1.8
11_04_0005 - 12021087-12021473 29 1.8
07_03_0227 - 15398371-15398925 29 1.8
10_08_0438 + 17919355-17919391,17919491-17919544,17919928-179201... 29 2.3
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 2.3
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 28 4.1
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 28 5.4
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.4
02_05_0156 + 26341904-26342801,26343469-26344148 27 7.1
>12_01_0152 - 1168928-1169377
Length = 149
Score = 111 bits (267), Expect = 3e-25
Identities = 48/83 (57%), Positives = 66/83 (79%)
Frame = +2
Query: 5 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIR 184
VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 185 VTVKGGGHVAQVYAIRQAISKAL 253
+ V+GGG +Q+YAIRQAI+KAL
Sbjct: 73 IRVRGGGKTSQIYAIRQAIAKAL 95
Score = 103 bits (246), Expect = 1e-22
Identities = 45/53 (84%), Positives = 50/53 (94%)
Frame = +1
Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 97 AYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 111 bits (267), Expect = 3e-25
Identities = 48/83 (57%), Positives = 66/83 (79%)
Frame = +2
Query: 5 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIR 184
VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 185 VTVKGGGHVAQVYAIRQAISKAL 253
+ V+GGG +Q+YAIRQAI+KAL
Sbjct: 73 IRVRGGGKTSQIYAIRQAIAKAL 95
Score = 103 bits (246), Expect = 1e-22
Identities = 45/53 (84%), Positives = 50/53 (94%)
Frame = +1
Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 97 AYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +2
Query: 17 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 196
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 197 GGGHVAQVYAIRQAISKAL 253
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 35.9 bits (79), Expect = 0.020
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +2
Query: 17 GRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFSMVDIRV 187
GR+KTA A + G G + +N R P ++Y + P++ LG E + D+ V
Sbjct: 102 GRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--NSYDVFV 158
Query: 188 TVKGGGHVAQVYAIRQAISKALTP-STRN 271
V GGG Q AI +++AL ST N
Sbjct: 159 KVHGGGLSGQAQAICLGVARALVKISTAN 187
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Frame = +1
Query: 160 KILYGRH--QSDSQGWWSC---STSLRYQTSYFEGSDAFYQKYVDEASKKEIKDI--LVQ 318
KI Y + QS + WW S S R ++ +AFY+KY E+ K+ K+ L Q
Sbjct: 15 KITYATYMLQSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQ 74
Query: 319 YDRSLLVADPRRCEPKKFGGPGARAR 396
+ + + R P+ G++AR
Sbjct: 75 VEYEIEFSRLARFAPEFVQTDGSKAR 100
>11_04_0005 - 12021087-12021473
Length = 128
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 223 RYQTSYFEGSDAFYQKYVDEASKKEIKDI 309
RY+ SY EG D F + A+ K+ KDI
Sbjct: 11 RYRASYIEGVDIFMKAAKKNAASKKTKDI 39
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 137 VPEVCTAAVWAQPSPMDARLHAAFH--DHACNTQLRWRF 27
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>10_08_0438 +
17919355-17919391,17919491-17919544,17919928-17920186,
17920396-17920484,17920645-17920775,17920900-17920946,
17921029-17921137,17921217-17921303,17921521-17921692,
17921837-17922309,17922402-17922463,17922537-17922639,
17923535-17923636
Length = 574
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 274 HISGRRRQSLRNSLSDSVNLCYMTTTLDCHSDVDHREFFLAEQKD 140
HIS +++ + S D+VNL T+++ HSD + E ++D
Sbjct: 369 HISDDKKEVVAISEEDAVNLVEAKTSINLHSDQEKDEIVKPMEED 413
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 111 DCCST-NFRNLSFCSARKNSLWSTSE*QSRVVVM 209
+CC+ + +LS C KN++W S S ++V+
Sbjct: 725 ECCNQLRYLSLSNCDVGKNAIWKISAPNSNIIVL 758
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 91 WTPVYTQHSMTTLAIRNCGGGFLTSEYLD 5
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = -2
Query: 271 ISGRRRQSLRNSLSDSVNLCYMTTTLDCHSDVDHREFFLAE--QKDRFLK-FVLQQSGLN 101
IS RRR R ++ LC MT C+ F E Q+D F F ++
Sbjct: 1976 ISDRRRSLFRENIPIDSKLCVMTVLQFCYRRSSRASIFSLEQLQQDNFGDIFKATSQSMD 2035
Query: 100 QVQ-WTPVYTQH-SMTTL 53
V+ + PV+ H S+ TL
Sbjct: 2036 AVRIYDPVFILHFSIHTL 2053
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 80 NGRPLDLVEPRLLQYKLQEPILLL 151
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 433 WFR*RLNGKISGIWHGH 383
WFR R G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,518
Number of Sequences: 37544
Number of extensions: 296019
Number of successful extensions: 853
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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