Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30415
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   9e-23
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.009
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        32   0.33 
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               29   2.4  
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)           29   3.1  
SB_25131| Best HMM Match : Ion_trans (HMM E-Value=1.9e-37)             29   3.1  
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)               28   4.1  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   7.2  
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   27   7.2  
SB_56942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     27   9.5  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  103 bits (247), Expect = 9e-23
 Identities = 47/53 (88%), Positives = 50/53 (94%)
 Frame = +1

Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
           A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 55  AYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107



 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 32/43 (74%), Positives = 39/43 (90%)
 Frame = +2

Query: 125 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKAL 253
           K++EPILLLGKE+F  VDIRV VKGGGH +++YAIRQAISK+L
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSL 53


>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 29/79 (36%), Positives = 36/79 (45%)
 Frame = +2

Query: 17  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 196
           G +K + A A+  +G G + VN RP      RL Q K Q        +     D    V 
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396

Query: 197 GGGHVAQVYAIRQAISKAL 253
           GGG   Q  AIR AIS+AL
Sbjct: 397 GGGLTGQAGAIRLAISRAL 415


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 360
           AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 55  AFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 176 DIRVTVKGGGHVAQVYAIRQAISKAL 253
           DI+V V GGG   Q  AI+  I++AL
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRAL 348


>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
          Length = 623

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 286 RLRLHISGRRRQSLRNSLSDSVNLCYMTTTLDCHSDVDHREFFLAEQKDRF 134
           R+ +++SGRR ++ RN+L+        +   D   D + +E+F     D F
Sbjct: 39  RVTINVSGRRFETWRNTLARFPETLLGSDEKDYFYDAETKEYFFDRDPDLF 89


>SB_25131| Best HMM Match : Ion_trans (HMM E-Value=1.9e-37)
          Length = 464

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = -2

Query: 286 RLRLHISGRRRQSLRNSLSDSVNLCYMTTTLDCHSDVDHREFFLAEQKDRFLKFVL 119
           R+ L++SGRR  +  ++L    N    +  L+ + D + RE+FL ++     +++L
Sbjct: 69  RVTLNVSGRRFCTWESTLKKYPNTLLGSDALNLYFDKEKREYFL-DRDPHIFRYIL 123


>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
          Length = 910

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 274 HISGRRRQSLRNSLSDSVNLCYMTTTLDCHSDVDHREFFLAEQKDRFL 131
           H+  R      +  +D+ +LCY   T D + D    E F     D FL
Sbjct: 736 HMIARYGSCCNHLFTDTDSLCYSVKTTDIYRDFQEDEDFSEYSTDHFL 783


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 169 REFFLAEQKDRFLKFVLQQSGLNQ--VQWTP 83
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 133 LKFVLQQSGLNQVQWTPVYT 74
           LK     SG+N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 202 WSCSTSLRYQTSYFE 246
           WSCSTS+R +TS F+
Sbjct: 155 WSCSTSMRNRTSIFK 169


>SB_56942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 391 HGHLDHRTSWARSDAGQPPANSYRIELG 308
           HG L+H + WA   A Q P    +I+LG
Sbjct: 30  HGRLNHESVWA--SASQSPGEYIQIDLG 55


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 96  TWLSPDCCSTNFRNLSFCSARKNSLWSTS 182
           TW+ P C S+NF + S  ++  NS+ STS
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNSI-STS 743


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,635
Number of Sequences: 59808
Number of extensions: 308845
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)