Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30415
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 133 7e-32
Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical pr... 32 0.29
AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80 prot... 32 0.29
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z93397-5|CAD89745.1| 375|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical pr... 28 4.8
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 28 4.8
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 27 6.3
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 27 6.3
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 133 bits (322), Expect = 7e-32
Identities = 57/84 (67%), Positives = 76/84 (90%)
Frame = +2
Query: 2 AVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDI 181
+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F VDI
Sbjct: 7 SVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDI 66
Query: 182 RVTVKGGGHVAQVYAIRQAISKAL 253
R+ V GGGHVAQ+YA+RQA++KAL
Sbjct: 67 RIRVSGGGHVAQIYAVRQALAKAL 90
Score = 91.9 bits (218), Expect = 3e-19
Identities = 41/53 (77%), Positives = 46/53 (86%)
Frame = +1
Query: 256 AFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 414
A+Y KYVDE SK+E+K+I YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 92 AYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144
>Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical
protein K10G9.3 protein.
Length = 424
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 199 WWSCSTSLRYQTSYFEGSDAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--F 372
+W S+RY + +DAF +KY+D K+ D++ LV D + +P++
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKR---------DKTKLVDDWTKEKPRRTAI 280
Query: 373 GGP 381
GGP
Sbjct: 281 GGP 283
>AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80
protein.
Length = 424
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 199 WWSCSTSLRYQTSYFEGSDAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--F 372
+W S+RY + +DAF +KY+D K+ D++ LV D + +P++
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKR---------DKTKLVDDWTKEKPRRTAI 280
Query: 373 GGP 381
GGP
Sbjct: 281 GGP 283
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 271 YVDEASKKEIKDILVQYDRSLLVADPRRCE 360
+ DE +KE+ D+ QYDRS+ + D R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>Z93397-5|CAD89745.1| 375|Caenorhabditis elegans Hypothetical
protein ZC482.8 protein.
Length = 375
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 289 LRLRLHISGRRRQSLRNSLS-DSVNLCYMTTTLDCHSDVDHREFFLAEQ 146
L ++LH + R+R++L N S ++ L + C S+ + FFLA++
Sbjct: 248 LLIKLHKTARKRKNLNNDKSRNTSKLIILMACSFCCSETLYGSFFLADK 296
>Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical
protein F01G4.2 protein.
Length = 258
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 109 QTAAVQTSGTYPFARQGKILYGRHQSDSQG 198
QT V GT+ R G L G H+ D+ G
Sbjct: 113 QTIDVNVLGTFNVIRHGVALMGEHEKDANG 142
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 331 LLVADPRRCEPKKFGGPGARARY 399
LL DPR+ E K PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 205 TTTLDCHSDVDHREFFLAEQKD-RF--LKFVLQQSG 107
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 205 TTTLDCHSDVDHREFFLAEQKD-RF--LKFVLQQSG 107
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,078
Number of Sequences: 27780
Number of extensions: 228312
Number of successful extensions: 616
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -